Cricetulus griseus (Chinese hamster): 100765798
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Entry
100765798 CDS
T02813
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X7
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cge
Cricetulus griseus (Chinese hamster)
Pathway
cge03013
Nucleocytoplasmic transport
cge03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cge00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100765798 (Upf1)
03015 mRNA surveillance pathway
100765798 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cge03019
]
100765798 (Upf1)
Enzymes [BR:
cge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100765798 (Upf1)
5.6.2.5 RNA 5'-3' helicase
100765798 (Upf1)
Messenger RNA biogenesis [BR:
cge03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100765798 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100765798 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100765798
NCBI-ProteinID:
XP_027250478
UniProt:
A0A9J7F8A5
LinkDB
All DBs
Position
1
Genome browser
AA seq
1131 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDTDLTQRPDYGDEIAIELRSSVGAPVEVTH
NFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQG
LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAV
DQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGEL
SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM
VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPA
LSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNR
TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVD
AFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNH
LLSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVY
DRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAG
RGTPKSKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQM
SQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcttggacactgaggag
gccgagctactcggcgccgacacccagggttccgagttcgagttcaccgacttcaccctt
cccagccagacgcagacgccccccggcggccccggcggcgcgggaggtccgggcggagcg
ggcgcaggcggcgcggccggccagctcgacgcgcaagttggacctgagggcatcttgcag
aatggggctgtggatgacagtgtggccaagaccagccaactgctggctgagctgaacttt
gaggaagatgaagaagacacgtactacactaaggacctcccagtccacgcctgcagttac
tgcggaatccatgaccctgcgtgcgtggtttactgcaataccagcaaaaaatggttctgc
aatggtcgaggaaatacttctggcagccacattgtaaatcacctggtgagggctaaatgc
aaggaggtgacgcttcacaaggatgggccactgggcgagacggtgctggagtgctacaac
tgcggctgccgcaacgtcttcctgctaggcttcatccctgccaaggccgactcggtggtg
gtgttgctgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcccagtggcagcccctgatccaggaccggtgcttcctgtcatggctggtcaagatt
ccctcagagcaggaacagctacgggcacggcagatcactgcccagcagatcaacaagctg
gaggagctttggaaggaaaacccttcagccaccctggaggacctggagaaaccaggtgtg
gatgaggagcctcagcatgtgctcttgcggtacgaggatgcttaccagtaccagaacatc
tttgggcccctggtcaagctagaggctgactacgacaagaagctgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagatatg
cggctcatgcagggtgatgagatctgtctacgatacaaaggagacctagcgcccctgtgg
aaggggattggccatgtcatcaaggtccctgatacagacttaactcagcggccagattac
ggtgatgagattgctattgagctccgaagcagcgtgggtgcacccgtggaggtgacccac
aacttccaggtggattttgtgtggaagtcgacctcttttgataggatgcagagtgcattg
aagaccttcgctgtggatgagacctctgtgtcaggttacatctaccacaagctgctgggc
cacgaggtggaggatgtggtcatcaagtgccagctgccaaagcgcttcacggctcagggg
ctccccgacctcaaccactctcaggtgtacgctgtgaagaccgtgttacagagaccgctt
agtctcatccaaggccctccaggcacaggcaagaccgtgacatctgccactattgtctac
caccttgctcggcagggcaatgggcctgtgctggtatgtgccccaagtaatatcgctgtg
gaccagctcacagagaagatccaccagacaggactgaaggttgtacgcctctgtgccaag
agccgagaggccattgactcccccgtgtccttcttggctctgcacaaccagatcaggaac
atggacagcatgcctgagcttcagaagctgcagcagctgaaggatgagacgggcgaactg
tcgtccgcagatgagaagcggtaccgggcactcaaacgcacagccgagagagagctgctc
atgaacgcagatgtcatctgctgcacctgtgtgggtgctggtgacccgaggctagccaag
atgcagttccgttccatcctcattgatgaaagcacccaggccactgagcctgagtgcatg
gtgcctgtggtccttggggccaagcagctgatccttgtgggtgaccactgtcagctgggc
cccgtggtgatgtgcaagaaggcagccaaggccggactgtcgcagtcgctctttgagcgc
ctggtggtgctgggcatccggcccattcgcctgcaggtgcagtaccgcatgcaccccgcg
ctcagcgccttcccgtccaacatcttctacgagggctcattgcagaatggcgtcactgca
gcggatcgtgtcaagaagggctttgatttccagtggccacaacctgacaagcccatgttc
ttctacgtgacacagggccaggaggagatcgccagctcgggcacgtcctacctcaacagg
accgaggcagccaatgtggagaagataactacaaagctgctgaaggcaggtgccaagccg
gaccagattggcatcatcacaccctacgagggccagcgctcctacctggtgcaatatatg
cagttcagcggctccctgcacaccaagctctaccaggaagtggagattgccagtgtggac
gccttccagggacgggagaaggacttcatcatcctgtcctgcgtgcgcgccaatgagcac
cagggcatcgggttcctgaacgacccccgtcgtctcaatgtggccctcaccagagcaagg
tatggcgtgatcattgtgggtaacccaaaggcgctgtcaaagcagccgctgtggaaccac
ctgctgagctactacaaggagcagaaggcactggtggaggggccgctcaacaacctgcgt
gagagcctcatgcagttcagcaagcctcgaaagctcgtcaacaccgtcaacccgggggcc
cgcttcatgactacagccatgtatgatgcccgagaggccatcatccctggatctgtctat
gaccgcagcagccagggccggccatcaaacatgtacttccagacccacgaccagattggc
atgatcagcgcaggtcccagccatgtggctgccatgaacatccccattcccttcaacttg
gtcatgcctcccatgccgccgcctggatactttggacaggccaatgggccagctgctggc
cggggtaccccaaaaagcaagactggccgtggaggacgccagaagaaccgcttcgggctt
cctgggcccagccagaccacccttcccaacagccaggccagccaggatgtggcctcacag
cccttttcccagggcgccctcacacagggctatgtgtccatgagccaaccctcccagatg
agccagcccggcctctcccagccagaactgtcccaggacagctacctcggtgatgagttt
aaatcacagattgatgtggcactctcccaagactccacataccagggggagcgggcatac
cagcatggcggggtcaccgggctgtcccagtactag
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