Cryptococcus gattii: CGB_F4240C
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Entry
CGB_F4240C CDS
T02232
Name
(RefSeq) strand exchange protein (5'-3' exoribonuclease)
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cgi
Cryptococcus gattii
Pathway
cgi03008
Ribosome biogenesis in eukaryotes
cgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CGB_F4240C
09123 Folding, sorting and degradation
03018 RNA degradation
CGB_F4240C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgi03021
]
CGB_F4240C
03019 Messenger RNA biogenesis [BR:
cgi03019
]
CGB_F4240C
03009 Ribosome biogenesis [BR:
cgi03009
]
CGB_F4240C
03016 Transfer RNA biogenesis [BR:
cgi03016
]
CGB_F4240C
Transcription machinery [BR:
cgi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CGB_F4240C
Messenger RNA biogenesis [BR:
cgi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
CGB_F4240C
Ribosome biogenesis [BR:
cgi03009
]
Eukaryotic type
Pre-60S particles
RNases
CGB_F4240C
Transfer RNA biogenesis [BR:
cgi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
CGB_F4240C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
10190323
NCBI-ProteinID:
XP_003194855
UniProt:
E6R8B5
LinkDB
All DBs
Position
F:complement(join(824871..825034,825098..825659,825730..826033,826083..826286,826336..828169,828220..828369,828424..828592,828640..828642))
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AA seq
1129 aa
AA seq
DB search
MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM
NGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQR
SRRFRAAQEAADKEEERKEAVKLFEAMGHTVSEETANRKSWDTNAITPGTPFMDLLSISL
KYWVSYKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDA
DLIMLSLATHEPHFRVLREDVFAQSSKGPPACKNCGKVGHIAANCKGDKKVKDPNVVEVA
KTEDPKPFIFLDVACLREYLAIELVVPGVPFPFDLELAIDDWIFMIFFVGNDFLPHLPSL
EIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRKDDEER
QEHSQKRRRIEEHKRQDEDKAREVGRNALTLNGTEYVAVDNPAATARGGPLHPSLPSRPA
FDLVPKEEAAKPDDQQQRAKKAMAGSNSDIVKNRKAIRMANMSAAQALKAELEGSDDVNI
DDKKAIAQEGKEEDEAVVTVERTEDEEKEQLTKEEARGILDEQGEKEGVDEEIVPPAIQT
DEDEGEAPVGDATMAENDDSVTTNDDEDPTHVPRKRKRGDSDGDKESNEEDEDDDEDDDD
DAPPNPEADQPIPKKKLRVNADGTVDYEDDIKLWEPGYRERYYEKKFGVKLSEREFIDKV
TKSYMEGLCWVLEYYYQGVPAWDWFYPYHYAPFAQDFRSVGSMDIKFETSMPFKPFAQLL
GVFPAASRIHLPEPLQTLMIDEDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLL
TALKSKEELLSDDEKRRNSWGDNVMFIANENPLYDLFCDKLYGLRAKDPIPIDTKASYGM
TGSVLPDPNCVPASTFDTPIPSISECPDLNPNDSISVRYYFPRQAHPHRSILLRGYRPEP
ARLTESDKDWVRRGGQGGRRGHRQSGGGNGNVTGGPGMARGRYESGPPRTNGYQQPPPRS
NYGGGSGYGYGAPAPLPSRPPISSYGGGAGGYGYGNPYAAAPNPYAGGYGAPAPYAAGGY
DQRPYVPPLPPPNPYSAPPPTYGRPPAGGYGYGAPPPRGGGYNPYTSRR
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagctctcttccgatggctttctaagaagtaccccaagatcgtcgagcga
gttaaagaggacactccaaagaagatcagaggtccagatggcgaaattgttgaggagcca
ataagatatgaaaatcccaatcctaacgggttcgaggtggataacctttatctggatatg
aacggtatcgtgcatccctgtacgcaccccgaaggccgaccggcaccagagacagaagag
gaaatgatggtggagattttcaagtatactgaaagggtagtcaacatgtgcaggccgaga
aaagtcttgatgatggctatcgatggtgtcgctcctcgggccaagatgaatcaacagcgt
tctcgtcgattcagggccgcccaagaagccgcagacaaggaagaagagaggaaagaggct
gtcaaattgtttgaagccatggggcacactgtttcagaagagacagccaaccgcaagagc
tgggataccaacgcaatcacccctggtacaccattcatggaccttctctcaatatcacta
aaatactgggtgtcctacaagctcacaactgatcctggatggaaagacctcaaaatcatt
ctttctgactcatccgttcccggtgagggtgagcacaagatcatggactggattcgtcgt
cagcgaagctatcccacatgggacgccaacacgtcacatgtcatctacggattggacgct
gatttgattatgctttcacttgctacccacgagccccacttccgggttcttcgagaagac
gtcttcgcacaaagttctaaggggcctcctgcttgcaaaaactgtggcaaagttggtcat
atcgctgcgaactgtaagggcgataaaaaggtcaaagatcccaatgtcgtcgaagttgcc
aaaacggaggaccccaaacctttcatcttccttgatgtggcttgcttacgcgagtatttg
gcaattgagcttgttgtaccaggagtgcctttcccatttgatctcgaattggcgattgat
gactggattttcatgattttcttcgtcggtaacgatttcttacctcatctgccgagtttg
gaaattcgtgaaggtgcgattgatgtgctgctcaagatttggagggcagagctaccgagg
atgggtggttaccttaccaaccacggcaaggtcaatctcgaccgagctcaagttattttg
gaagggctggccaagtctgaggacgaaatcttccagaagagaaaggatgatgaagaacgc
caggagcattcccagaagcgcagaaggatcgaagagcataagcgacaggatgaggacaag
gcgcgtgaagtagggcgtaatgctttgaccttgaacggcacagagtacgtcgccgttgat
aaccccgctgcaactgctcgtggcggtcctctccacccatcattgccatctcgaccggcg
ttcgacctcgtccccaaagaggaggcggcaaagcccgatgatcagcagcaaagggcaaag
aaggcaatggctggctccaactcggacatagttaaaaatcgtaaggctatcaggatggca
aatatgagtgcggctcaggcactcaaagctgagttggagggtagtgatgacgtgaacatc
gacgacaaaaaggcgattgctcaagaaggaaaggaagaggatgaagcggttgtgactgtt
gagaggacggaggacgaggaaaaggaacagttgacaaaagaggaagctagaggaattctg
gacgagcaaggcgagaaggaaggtgttgacgaggagatagtccctcccgctatccagaca
gacgaggatgagggtgaggcgcctgtcggcgatgccaccatggccgagaatgacgactct
gttaccaccaacgacgacgaggatcccacacatgtccctcgcaagaggaagaggggtgat
tccgatggtgataaggagagcaatgaggaggatgaggatgacgacgaagatgatgatgac
gatgcaccaccaaatcccgaagctgaccagcctattccgaagaaaaagctcagggtcaat
gcagacggaacagtcgattatgaagatgatatcaagctgtgggagcccggatacagagaa
aggtattacgagaagaagtttggtgtgaaattgtcagagagagagtttattgacaaggtt
accaagtcctacatggaaggactctgctgggttcttgaatattattaccagggtgttcct
gcctgggattggttctatccttatcactatgctccctttgctcaagacttccgcagtgtt
gggtctatggacatcaagtttgagaccagtatgcctttcaagccgtttgctcagcttttg
ggtgttttcccagccgctagccgaattcatttgcctgaaccgttacagactctcatgatt
gacgaagactcacccatcctcgacttctaccctcccgactttgagatcgacatgaacggc
aaaaaaatggcttggcaaggcgtggctcttttgccatttatcgaccagaatcgtctcttg
accgctttgaagagtaaggaggagcttctgtctgatgacgagaagaggagaaatagttgg
ggagacaatgttatgttcatcgcgaacgagaatccgttgtatgatctattctgtgataag
ttgtacggtttaagagcgaaggaccctataccaattgacaccaaagcttcgtacggcatg
actggttctgttctacccgatcccaactgtgttcctgcgtccacatttgacactcctatt
cccagcatttccgaatgccctgatcttaaccccaacgactctatatccgtccgatattac
ttccctcgccaagcgcatcctcatcgatcgattcttctgagaggatacaggcctgagcct
gcgaggctgacggaaagcgacaaagattgggttcgacgtggtggtcaaggtggaagaaga
ggtcacaggcagagcggtggtgggaacggaaatgtaaccggtggaccgggtatggcgaga
ggaaggtacgagagtgggccgccacggaccaatggctaccaacaacctccacctaggtcg
aattatgggggtggctctggttacggctacggcgcccctgcacctctgccgtcaagacca
cctatatcatcgtatggtggtggagccggcggatatggctacggtaatccctatgcggca
gcgccgaatccttatgccggaggttatggagcgccagcaccttatgctgcaggaggctat
gatcagcgtccctacgtaccaccgctgcccccacccaacccatactctgccccacctcca
acatatggcagaccccctgcgggaggatatggttatggtgctcctcctccgagaggcggc
ggttacaatccttatacctccaggaggtag
DBGET
integrated database retrieval system
