Carassius gibelio (silver crucian carp): 127933400
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Entry
127933400 CDS
T08819
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127933400
03015 mRNA surveillance pathway
127933400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127933400
03041 Spliceosome [BR:
cgib03041
]
127933400
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127933400
Spliceosome [BR:
cgib03041
]
Complex C
Other components
EJC/TREX
127933400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
127933400
NCBI-ProteinID:
XP_052386350
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All DBs
Position
A17:complement(22311507..22318564)
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AA seq
667 aa
AA seq
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MAVAVRSLQDQLEKAKESLKSVDENIRKLTGRDPTELRPGQNRRLTITGPGGGRGRGINL
LRRGLSDSGVGPPAKQRDIEGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSVVAT
SKERTRRDLIQDQTIDERGKQRNRRMFGLLMGTLQKFKQESTVSTERLKRRQEIEQKLEV
QAEQERKKVESERRELFEERRAKQTELRLLEHKVELAQLQEEWNAHNSKLIKFIRTKTKP
PIFYLPGRMCSATQKLLEESQKKLNGVFDERREAFAEQLNKMEARPRRQFQRIGDKEMED
NRQAEETKKEDQEEGKAGVGRTGNRHDVEMEDEEEDVVEEEGEESSEIREREGDKEQEQD
EEKDKHEESERKAEEEDEEEDEEDMGASEVREEQMEGKEVVREDEAQGKLQVESPEATVE
EVGNVQKEEEQEAEMETQQDVVTDSLQTPESHMETQPEESKPPQLDVPTPSITEHDSKQD
DTASDTQQPQLEPDPEVLSQEQSQEPSVQPQEAKADTKEAREEADDARGRAKVHAKKSKS
RSSSSSSSSSSSSSSSSGSSSSSSGSSSRSSSSGSSSSSSSSRSRSHGRDRDGRDHKRRR
RLSDRERKKSGSERGHKSSKGNGRENKGSKDKNSKPDRKRTSSDGSRSGKRSSRSERDRK
SDRKDRR
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccgtgcgaagtttgcaagaccagctggaaaaagccaaggaaagcttaaag
agcgtggacgaaaatatccgaaagctaaccgggagagatccaaccgaattaagaccgggt
caaaataggagactgaccatcacaggcccaggaggaggtagggggcgtggaatcaatctg
ctaaggcgtggactgtcagatagtggtgtaggacccccagccaaacagagggacatcgaa
ggggcactcttgaggctggcaggggaccagcgagccaggagagattcacgccatgacagc
gacgctgaggatgatgacgatgtcaaaaaaccagcgttgcagtcatctgtggttgctacc
tccaaagaacgtacgcgccgagatcttattcaagatcagacaattgatgagagaggaaag
cagagaaaccggcgcatgtttggcctgttgatgggaacgttgcagaagttcaaacaagag
tctacagtgtccacagagcgattaaaaagacggcaagaaatcgagcagaaattggaagta
caggcagaacaggagcgtaaaaaagttgagagtgaaaggagagagctctttgaagaaaga
cgtgccaaacaaacagagctgcgtcttctggagcacaaagtggagcttgctcaactgcaa
gaagagtggaatgcacataattctaagctcatcaagttcattcgcacgaagaccaagccc
ccgatcttctacctgcccggtcgaatgtgctctgctactcaaaagctcctggaggagtct
cagaaaaaattaaatggtgtgtttgatgagagacgtgaagcctttgcagagcaactcaac
aaaatggaggctcggccaaggcgtcagttccaaaggataggtgacaaagaaatggaggat
aaccgtcaggctgaagagacgaagaaagaagatcaagaggagggtaaggctggagtaggc
cggacaggtaacaggcatgatgtggagatggaggacgaggaggaagatgtagttgaggag
gaaggagaggagagctcagagattagggagagggagggggataaagagcaggaacaggat
gaggaaaaggataaacatgaggagagtgagaggaaggcagaggaggaagatgaggaggag
gacgaggaggatatgggagcaagtgaggttagggaagagcagatggagggcaaagaagtt
gtcagggaagatgaggcacagggtaagttgcaggttgagagtccagaagccacagttgaa
gaggtaggtaatgtgcaaaaggaggaagagcaggaggcagagatggagactcagcaggat
gttgtaacagactccctacaaacccctgaaagccacatggaaacacaacccgaggagagt
aaaccgcctcaactggatgtcccaacacctagcataacagaacatgacagtaaacaagat
gacactgcgtctgatacccaacaaccacagcttgaacctgacccagaagtcctttctcaa
gaacaaagccaagaaccatcagtccaaccacaagaagccaaagcagacactaaggaagct
agggaggaggcagatgacgcacgtggacgggccaaagtccatgccaagaagagcaagagc
agaagtagcagcagctcctcttccagttcctcttcaagctcctcctccagtggatccagc
tcctcttccagtggctccagtagcaggagcagttcctctggctcctcgtcgtcgtcttcc
agttcgcgctcccgtagtcacggcagggatcgagacggtagagaccacaagcgccgcagg
agactgtcggaccgggagcgcaaaaagagtggcagtgagaggggacacaagtcctcaaaa
ggcaacggacgagaaaacaagggctccaaagacaagaactccaaacctgaccggaagagg
acgagttcagatggaagccggtcagggaagaggtcatccagaagcgagagagatcggaag
tctgatcggaaggatcggcgttga
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