Colletes gigas: 122404112
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Entry
122404112 CDS
T07492
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
cgig
Colletes gigas
Pathway
cgig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122404112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122404112
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122404112
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP43_N
RRM_1
RRM_7
TDP-43_C
Motif
Other DBs
NCBI-GeneID:
122404112
NCBI-ProteinID:
XP_043263952
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MSSYIQVAEDEGDEPIELPTEDDNTLLLTTVTAQFPGTCGLKYRNPESRTMRGIRLVDGR
LHPPENGWGKAIYFCVFPKENKRKSDDNLENSTAKTKRMETKLRCTDLIVLGLPWKTTEQ
NLREYFETFGEVLMAQVKKDAKSGHSKGFGFIRFGSYESQLRCLAQRHMIDGRWCDVKVP
NSKEGMIHQVPCKVFVGRCTEDLTADDLRDYFSKYGEVTDVFIPKPFRAFSFVTFLDPEV
AQSLCGEDHIIKGVSVHVSNAAPKSEGNNKNFNNQMNLNMRRGAPGPAENNVQGTYQGNR
YMGHSGNNMGPNGWNNPGNRGNLDMPNLQALGITGQNNGGGGGGGMSNPLAMGGINLSAL
PVNPALVAAALNQASWGLIGNLQNQGNDQGYSNQPGPPGQPPSGNNSIGNSGNSGFLSWM
NQGGGDGNTGNPGTGGPGPNNPNASQGAWQNHPGQRDQKSNTFLKYE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtacatccaggttgctgaggacgagggcgacgagccgatagaattgcctaca
gaggacgataacacgctcttattgaccaccgtgaccgcccagtttcccggaacgtgtggc
ctgaaataccgcaatcccgaatcacggacgatgcgcggtatccgtctcgttgacgggcgt
cttcatccgccagaaaatggatggggcaaggcaatttacttttgtgtctttccaaaagag
aacaaacgtaaatctgatgacaatttggaaaattccacagctaagactaaaagaatggaa
acaaagttgcgttgcacagacttgatcgtacttggtttaccgtggaaaacgactgagcag
aacttgcgcgagtatttcgaaacatttggcgaagtacttatggcccaggtaaagaaagat
gctaagtctgggcatagcaaaggatttggttttattagattcggaagttatgaatcccaa
ttaagatgccttgcacagcggcatatgatagatggtagatggtgcgatgtcaaggttccc
aacagtaaggagggaatgattcatcaagtaccctgcaaggtattcgtgggacgctgtaca
gaagacctaactgctgatgatctgcgtgactatttctccaaatatggcgaagtgacggac
gtgttcatcccaaaacctttccgtgcattttcatttgttactttcttagatcccgaggta
gcccagtccctgtgtggggaggatcacataataaaaggagtatcggtacacgtgtcaaac
gccgcgccgaagtccgagggcaacaataagaatttcaataatcaaatgaacttgaacatg
cgtagaggcgccccaggccctgccgagaataacgtgcagggaacctatcagggtaacaga
tacatgggccactctggtaataatatgggcccaaacggttggaacaatccagggaatcgt
ggcaacctggatatgcctaatctccaagctctgggcattactggacaaaataacggcggc
ggtggcggcggcggtatgtctaatccattggcgatgggaggtataaatctgtccgcgtta
cctgtcaatcctgcactggttgccgctgccctgaaccaagcatcttggggtctgatcggt
aacttgcagaatcagggaaacgatcagggctattcgaaccagcctggcccacctggtcaa
ccgccttcaggcaacaatagtattggtaacagtggaaactctggctttctcagttggatg
aatcagggtggaggtgatggtaatacaggcaatcccggaacaggtggaccaggcccgaat
aatccgaacgcgtcccaaggtgcttggcagaatcatcccggacagcgtgatcagaagtca
aatacctttctcaagtacgagtaa
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