Chryseobacterium gallinarum: OK18_00335
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Entry
OK18_00335 CDS
T03954
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cgn
Chryseobacterium gallinarum
Pathway
cgn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OK18_00335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgn03400
]
OK18_00335
Enzymes [BR:
cgn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OK18_00335
DNA repair and recombination proteins [BR:
cgn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OK18_00335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AKK71290
UniProt:
A0A0G3LY28
LinkDB
All DBs
Position
complement(70872..73571)
Genome browser
AA seq
899 aa
AA seq
DB search
MGLSKYREKRSEENTPEPFGGKPTGTELRFVVQKHDASHLHYDFRLEMDGVLKSWAVPKG
PSMDPSVKRLAMMVEDHPYDYRNFEGIIPKGQYGGGTVIVWDEGTYEPAEGNLKDVSKQE
KELLHQLYSGKLKFKLNGKKLKGEFALVKAHGRGDNGWLLMKLDDKYASEKDITAKDKSV
ISGKTIPQMEKSPDKVYGENIIKKDSTVKDKRSTKKKAAELINDQLEAVPSDSPKNKANI
QSLLKKAPKQRFYTHIEPMLATLVNKPFDDEEWVYEVKWDGYRAVAFMHKGEVELKSRND
KSFNEKFYPIYDTLKALEFDAILDGEVVVLGESGTANFGSLQNWRSEADGDLVYYVFDIL
WYQGHDLTELTLLERKAILREILPKNNSILVSEHFETSGIQFLEEARKLGLEGIMAKRKE
SRYHTHNRSKDWLKIKANKRQEVVIGGYTLNDDSSKLFSSILVGVYEGKKLIYTGKVGTG
FNDKMQKEMMKLFKPLITDKVPFSEEPDVNKPSRFRPNPPHAAVTWLKPELVCEVSCTEL
TSDGIMRHPSFDGMREDKSARKVVLEEEAPTEKLVEEGADRIVTPGAKGQRKTLLNPKDK
TQVRKINRHELKFSNLDKVFWSKEGITKRDLINYYYQAAPFILPYLKGRPQSMNRFPNGI
EGEGFYFKNVTDTAPEWAETYLYQSDADDKDRHYLVGKDEATLLYMANLGCIEMNPWSST
VKKPEHPSFCIIDLDPDQNSFDQVIEAALVTKSILDDMGVPSYCKTSGSTGLHIYIPLGG
KYTYEQSKEFARVIVTLVHNELPRFTSIERAIKDRKGKMYLDFLQNRPHATIAAAYSVRP
KPGATVSMPLHWDEVKEGLKISDFHILNAIERMQSEGDIFKPVLGKGIDLKSIVDKHAH
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgggcttatctaaatatcgtgagaagcgttcagaggagaacaccccggaaccttttggc
ggaaaaccaacaggaacagaacttcgttttgtggtacaaaagcacgatgcttcccatttg
cattatgattttcgccttgaaatggacggggtactgaaaagctgggcggttcctaagggg
ccttcgatggaccccagtgtgaaacgtcttgcgatgatggtcgaggatcatccctatgat
taccggaattttgaagggatcatacccaaaggtcaatatggaggcggaacggtgattgtg
tgggacgaagggacttacgaaccagctgaaggtaacctgaaggatgtatcgaaacaggaa
aaagaacttttacaccagctctattccggcaagcttaaatttaagctcaacggcaaaaag
cttaaaggtgaatttgcactggtgaaggcccacggaaggggagataacggctggctcctg
atgaaacttgacgataaatacgccagtgaaaaagatattacggccaaagataagtcggtg
atctcgggtaaaaccattccacagatggaaaaatcgcctgataaagtttatggcgaaaat
attatcaaaaaggacagcaccgtaaaagacaagcgttcaacaaaaaagaaagcagcagaa
cttatcaatgaccagctggaagcagttccttcggatagtccgaaaaacaaagcaaacata
cagtccttactaaaaaaggcgccgaaacaacggttctatacccatatcgaacccatgctt
gctacactggtcaataaaccctttgacgatgaagaatgggtttacgaggtaaagtgggat
ggctaccgggctgttgcttttatgcataaaggtgaagtggaactgaaatcccgtaacgac
aagagcttcaatgagaaattctatccgatctatgatactttgaaagccttggaatttgac
gccatactggacggcgaggtggttgtgctgggagaaagcggtaccgccaatttcggctcc
ctacagaactggcgcagtgaagccgatggcgatctggtctactatgtttttgatatcctg
tggtatcagggacacgatctcacagagctgactcttctggaacgtaaagctattttaaga
gaaattctccctaaaaataacagcattctggtcagcgagcattttgaaacatccggtata
caatttctagaggaagccagaaagctgggactggaagggatcatggccaagcgaaaggag
agcagataccatacacacaaccggtccaaagactggttaaagatcaaagccaataagcga
caggaagttgtgatcggaggatatacgcttaacgatgattccagtaaattattcagcagt
attctggtaggcgtttatgaagggaagaaactgatctataccggtaaagtcggtacaggc
ttcaacgataaaatgcagaaggaaatgatgaaacttttcaaaccgcttatcaccgataaa
gtacctttctccgaagaaccggacgtcaataagccttcacgttttcggccaaatccgcca
catgcagcggtcacctggctgaaacccgagcttgtctgtgaggtgagctgcacggagctg
accagcgacgggatcatgcggcatccttcgttcgatggcatgcgggaggataaaagcgcc
agaaaagttgttctggaagaagaggcaccgactgaaaagctggtagaagaaggggcagac
cgtattgttacgccaggtgcgaaaggacaacggaaaaccctgttaaacccaaaagataag
acgcaggtgcggaaaataaaccgtcatgaattaaagtttagcaatctggataaggtcttc
tggtcaaaagaaggcatcaccaaacgtgacctcatcaattactattatcaggctgctccc
tttatattgccatacttaaaaggccgtccgcagagcatgaaccgttttcccaatggaatc
gaaggcgaaggtttttactttaagaatgtaactgatactgctcccgaatgggcagaaacg
tacctgtatcaaagtgatgctgatgataaagaccgtcattaccttgtgggaaaagatgaa
gcaacgcttctttacatggctaatctgggttgtatagaaatgaacccctggagcagcacc
gttaaaaagccggagcatccgagcttctgtatcatcgatcttgaccccgatcaaaattca
ttcgatcaagtgatcgaagccgccctggttaccaagagcatactcgatgatatgggcgta
ccgagctactgtaaaaccagcggttctacaggactacacatttatattccccttggcgga
aaatatacttacgagcagtcgaaagagtttgcccgggtcattgttacccttgtccataat
gagcttcccagatttaccagtatagaacgagctatcaaagaccggaagggaaagatgtat
cttgattttttacagaacaggccccatgctaccattgcagctgcatattccgtcaggccg
aaaccgggagccactgtatcaatgccgctccattgggatgaggtcaaagaaggcttgaaa
ataagcgattttcacatcctgaatgccattgaaagaatgcagagtgagggagatattttc
aagcccgttctaggaaaaggaatcgacttaaaatctatagttgacaaacatgctcattaa
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