KEGG   Chryseobacterium gallinarum: OK18_05350
Entry
OK18_05350        CDS       T03954                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cgn  Chryseobacterium gallinarum
Pathway
cgn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cgn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OK18_05350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cgn03400]
    OK18_05350
Enzymes [BR:cgn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OK18_05350
DNA repair and recombination proteins [BR:cgn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OK18_05350
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme DNA_ligase_OB_2 DNA_ligase_C
Other DBs
NCBI-ProteinID: AKK72139
UniProt: A0A0G3LZV4
LinkDB
Position
1178490..1180361
AA seq 623 aa
MLAKLTEKAFDDKDWIFEIKWDGYRAIADLRHDQPLFYSRNGISFLSKFDMVSRDFIHQK
HQMILDGEVVLYDDQGKPNFQLLQQIQDNPNPALVYQVFDLLWLNGHSTENLPLIQRKEL
LKEALVETDTIKYCDHIPEKGIYFFEQMKKMKLEGMIAKRADSLYIENHRTSDWLKIKFS
STEDVIICGFTAPRGLRESFGALILGKYIDGKLTYCGHTGTGFNNTSLKQLYERLRKLVI
KTSPFEIIPKTNMPVTWTKPELVCEIKYSEITKDGIFRHPVFVAVREDKSPEEITDSPIN
EKPNEMKAKAPSKKTKVSEKEKEITLNKHIVKLTNQDKIYFPEDGITKGDVIEYYQSVAS
YILPYLKNRPLSLNRFPNGIEEQSFYQKDAGENIPDWIQTTQVYSESNDKYIDYIYCNDK
ATLAYLNNLGCIDLNPWNSSLPDLEHPDYLVLDLDPSKKNTFDDVIETALQINEVLNSIT
IKGYCKTSGSTGIHIYIPMGGKYDFDQVKDFAHILMKQVNEKLPKITTLERSLQKRDQKK
IYLDYLQNRTGQTLASAYSLRPKQGASVSMPLDWDELKLGVKPTDFNIHNALDRIKDKGD
LFKPVLGKGIDMMKALELLQNIE
NT seq 1872 nt   +upstreamnt  +downstreamnt
atgcttgctaaacttactgagaaagcattcgatgataaagactggatctttgaaataaaa
tgggatggctacagggccattgctgacctgaggcatgatcagcctctcttctattcccgg
aatggaatttcattcttatcgaagttcgacatggtaagccgggattttatccatcagaaa
caccagatgatcctggatggagaagtggtcttgtatgatgatcaggggaaacctaacttc
cagcttttacaacaaatacaggataatcccaaccccgccctcgtttaccaggttttcgac
ctgctatggctgaatggacattctacggaaaaccttccccttattcagcggaaggaactt
ttaaaagaagctcttgttgaaaccgatactattaaatattgtgatcatattccggaaaag
gggatttatttttttgaacagatgaaaaaaatgaaacttgaaggaatgatcgccaaacgg
gctgacagcctatatatcgaaaatcacaggacaagcgactggcttaaaatcaaattttcc
agcacagaagacgttattatctgcggctttacagctcccagaggcttgcgggaaagtttc
ggagctcttatcctcggaaaatacattgatggaaaactgacgtattgcggccatacggga
acgggttttaataatacttctttaaaacagctttacgaaagactccggaagctggtcatc
aaaacgtctccgtttgaaataattcctaaaaccaatatgccggtaacctggacaaaaccg
gaactggtatgtgaaatcaaatattccgaaattaccaaagacggtatcttcagacatccc
gtttttgtagccgtccgtgaagacaaatctcctgaggaaattacagattcacccatcaac
gaaaaaccaaacgaaatgaaagctaaagcaccttcaaaaaaaacgaaagtctcagaaaaa
gaaaaagaaatcaccctgaataaacatattgtgaaactgaccaatcaggataaaatctat
tttccggaagatggcattactaaaggggacgtcatagaatattatcaatctgtagcctcc
tatattttaccttatctgaaaaacagacctctttctctcaaccgttttcccaatggtatt
gaagaacaaagcttttatcagaaagatgccggagaaaatattcccgactggatccagaca
acacaggtgtattcggaatccaatgataagtatattgattatatttactgtaatgacaaa
gcaacattggcttatctgaacaacttgggctgtattgatcttaatccctggaacagttca
ttacccgatctggagcatcccgattatctggtgctggatcttgacccttccaaaaagaat
acttttgatgatgtgatcgaaacggctcttcagatcaatgaagttttaaattccattaca
ataaaaggctattgcaaaacttcaggaagcaccggaatccatatttatattccgatggga
ggaaaatatgattttgaccaggtaaaagattttgcacatattctgatgaaacaggtcaac
gaaaaacttcctaaaatcaccaccttggaaagaagtctgcaaaaaagagatcagaagaaa
atttatcttgattatcttcagaacagaaccggacaaaccctggccagcgcttacagtttg
cgaccaaagcaaggggcatccgtatcaatgcctctggactgggatgagcttaagctaggg
gtaaagcccacagattttaatattcataatgcactggacaggatcaaagataaaggtgat
ctttttaaaccggtactgggcaaaggaattgatatgatgaaggcactggaattattacag
aatatagaataa

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