Chryseobacterium gallinarum: OK18_05350
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Entry
OK18_05350 CDS
T03954
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cgn
Chryseobacterium gallinarum
Pathway
cgn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OK18_05350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgn03400
]
OK18_05350
Enzymes [BR:
cgn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OK18_05350
DNA repair and recombination proteins [BR:
cgn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OK18_05350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AKK72139
UniProt:
A0A0G3LZV4
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Position
1178490..1180361
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AA seq
623 aa
AA seq
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MLAKLTEKAFDDKDWIFEIKWDGYRAIADLRHDQPLFYSRNGISFLSKFDMVSRDFIHQK
HQMILDGEVVLYDDQGKPNFQLLQQIQDNPNPALVYQVFDLLWLNGHSTENLPLIQRKEL
LKEALVETDTIKYCDHIPEKGIYFFEQMKKMKLEGMIAKRADSLYIENHRTSDWLKIKFS
STEDVIICGFTAPRGLRESFGALILGKYIDGKLTYCGHTGTGFNNTSLKQLYERLRKLVI
KTSPFEIIPKTNMPVTWTKPELVCEIKYSEITKDGIFRHPVFVAVREDKSPEEITDSPIN
EKPNEMKAKAPSKKTKVSEKEKEITLNKHIVKLTNQDKIYFPEDGITKGDVIEYYQSVAS
YILPYLKNRPLSLNRFPNGIEEQSFYQKDAGENIPDWIQTTQVYSESNDKYIDYIYCNDK
ATLAYLNNLGCIDLNPWNSSLPDLEHPDYLVLDLDPSKKNTFDDVIETALQINEVLNSIT
IKGYCKTSGSTGIHIYIPMGGKYDFDQVKDFAHILMKQVNEKLPKITTLERSLQKRDQKK
IYLDYLQNRTGQTLASAYSLRPKQGASVSMPLDWDELKLGVKPTDFNIHNALDRIKDKGD
LFKPVLGKGIDMMKALELLQNIE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctaaacttactgagaaagcattcgatgataaagactggatctttgaaataaaa
tgggatggctacagggccattgctgacctgaggcatgatcagcctctcttctattcccgg
aatggaatttcattcttatcgaagttcgacatggtaagccgggattttatccatcagaaa
caccagatgatcctggatggagaagtggtcttgtatgatgatcaggggaaacctaacttc
cagcttttacaacaaatacaggataatcccaaccccgccctcgtttaccaggttttcgac
ctgctatggctgaatggacattctacggaaaaccttccccttattcagcggaaggaactt
ttaaaagaagctcttgttgaaaccgatactattaaatattgtgatcatattccggaaaag
gggatttatttttttgaacagatgaaaaaaatgaaacttgaaggaatgatcgccaaacgg
gctgacagcctatatatcgaaaatcacaggacaagcgactggcttaaaatcaaattttcc
agcacagaagacgttattatctgcggctttacagctcccagaggcttgcgggaaagtttc
ggagctcttatcctcggaaaatacattgatggaaaactgacgtattgcggccatacggga
acgggttttaataatacttctttaaaacagctttacgaaagactccggaagctggtcatc
aaaacgtctccgtttgaaataattcctaaaaccaatatgccggtaacctggacaaaaccg
gaactggtatgtgaaatcaaatattccgaaattaccaaagacggtatcttcagacatccc
gtttttgtagccgtccgtgaagacaaatctcctgaggaaattacagattcacccatcaac
gaaaaaccaaacgaaatgaaagctaaagcaccttcaaaaaaaacgaaagtctcagaaaaa
gaaaaagaaatcaccctgaataaacatattgtgaaactgaccaatcaggataaaatctat
tttccggaagatggcattactaaaggggacgtcatagaatattatcaatctgtagcctcc
tatattttaccttatctgaaaaacagacctctttctctcaaccgttttcccaatggtatt
gaagaacaaagcttttatcagaaagatgccggagaaaatattcccgactggatccagaca
acacaggtgtattcggaatccaatgataagtatattgattatatttactgtaatgacaaa
gcaacattggcttatctgaacaacttgggctgtattgatcttaatccctggaacagttca
ttacccgatctggagcatcccgattatctggtgctggatcttgacccttccaaaaagaat
acttttgatgatgtgatcgaaacggctcttcagatcaatgaagttttaaattccattaca
ataaaaggctattgcaaaacttcaggaagcaccggaatccatatttatattccgatggga
ggaaaatatgattttgaccaggtaaaagattttgcacatattctgatgaaacaggtcaac
gaaaaacttcctaaaatcaccaccttggaaagaagtctgcaaaaaagagatcagaagaaa
atttatcttgattatcttcagaacagaaccggacaaaccctggccagcgcttacagtttg
cgaccaaagcaaggggcatccgtatcaatgcctctggactgggatgagcttaagctaggg
gtaaagcccacagattttaatattcataatgcactggacaggatcaaagataaaggtgat
ctttttaaaccggtactgggcaaaggaattgatatgatgaaggcactggaattattacag
aatatagaataa
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