Clupea harengus (Atlantic herring): 105907960
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Entry
105907960 CDS
T09045
Symbol
hdac4
Name
(RefSeq) histone deacetylase 4 isoform X1
KO
K11406
histone deacetylase 4/5 [EC:
3.5.1.98
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
105907960 (hdac4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
char03036
]
105907960 (hdac4)
Enzymes [BR:
char01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
105907960 (hdac4)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
105907960 (hdac4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HDAC4_Gln
Motif
Other DBs
NCBI-GeneID:
105907960
NCBI-ProteinID:
XP_031415887
Ensembl:
ENSCHAG00000012588
UniProt:
A0A6P8EYD7
LinkDB
All DBs
Position
2:28982445..29143810
Genome browser
AA seq
1065 aa
AA seq
DB search
MSSQSHPDGQEQPLELLKPSGLNHIPSTSPRHRVLHLPLVWTKGLMVDVSATLPLQVPPA
AIPMDLRVDHQFALAPVDPSQREQQLQQELLALKQKQQIQRQLLIAEFQRQHEQLSRQHE
VQLQEHIKHQQDLLALKHQQELLEHQRKLERHRHEQELEKQQREQKLMQLKNKERGQESA
VASTEVKMRLQEFVLNKKKALAQRNLNHCMPNDPRYWYGKTQHSSLDQSSPPQTGMSTYN
HPILGMYDSKDDFPLRKTASEPNLKLRSRLKQKVTERRSSPLLRRKDGPITTAKKRSLDM
AESACNSAPGSGPSSPNNSSNNITNENGVAGSVCSSPVEPSLAHRLAGREGHVSQLSLYT
SPSLPNITLGLPATGPSSVASGQQDSDRLGMPGLQPGIPLTTPFITGAHLPSYLASTLDR
DGGSAHNPLLQHMVLLEQSAAQNSLVAGLGGLPLQSPSIHKLRQHRPLGRTQSAPLPQNA
QALQQLVVQQQHQQFLEKHKQQFQQQQLHISKMMAKPSEPSRQHESHPEETEEELREHQA
LSDEGLPRGVTVKQEPPDEQDEELQQRDRQVEQELIFRQQALLLEQQRIHQLRNYQASME
AAGLSVTFPGHRPLSRAQSSPASANFPIVVQEPPTKPRFTTGLVYDTLMQKHQCMCGNTN
THPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHVLLYGTNPLRQKLD
SSVTPMFVRLPCGGMGVDSDTIWNEVHSSSAARLAVGSVVELVFKVAAGELKNGFAVVRP
PGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKVLIVDWDVHHGNGTQQAFYSDPNILY
VSLHRYDDGNFFPGSGAPDEVGSGPGVGFNVNMAFTGGLDPPMGDADYLAAFRTVVMPIA
NEFAPDVVLVSSGFDAVEGHPPPLGGYCLTAKCFGYLTKQLMGLAGGRLVLALEGGHDLT
AICDASEACVSALLGNELEPLPEEVLQQRPNPNAVHSMEKVLETQSKYWRCLQRYASTVG
YSLLEAQRCETEEAETVTAMASLSVANKQLGKRPEDEPMEEEAPL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgagttcccagagtcacccagatggacaagagcagccactggagctcctgaagccatct
ggactcaaccacattccctccacctctccccggcacagagtgcttcatctccccctggtg
tggaccaaagggctgatggttgatgtgagtgcgacgctgccgctgcaagtgccccccgcc
gccatccccatggacctgcgcgtggaccaccagtttgcgctggcgccggtcgaccccagc
cagcgggagcagcagctgcagcaggagctcctggccctcaagcagaagcagcagatccag
cggcagctcctcatcgccgagttccagcgccagcacgagcagctctcccgccagcacgag
gttcagctgcaggagcacatcaagcaccagcaggacctcctggccctgaagcatcagcag
gagctgctggaacatcagcgcaagctggagaggcaccggcacgagcaggagctggagaag
cagcagagggagcagaagctgatgcagctcaagaacaaggagcgcggccaagagagtgcg
gtggccagcacggaggtgaagatgcggcttcaggagtttgtcctgaacaagaagaaagct
ctggcccagaggaacctaaaccactgcatgcccaatgaccctcgctactggtatgggaaa
acccagcacagctccctggaccagagctcgcccccacaaacagggatgtccacttacaac
cacccgatcctggggatgtatgactccaaagacgacttcccactccgcaagacagcatct
gagcccaatctgaagctgcggtccaggctaaagcagaaggtgacggaacgcaggagcagt
cctctgcttcgacggaaggatgggcccatcaccactgccaagaagcgctccctagacatg
gcagagtcggcatgtaacagtgctcccggctctggccccagctcacctaacaacagttct
aacaacatcaccaatgagaacggcgtggccggatccgtttgcagcagtccggtggagccg
tccctggcgcacagactggcgggccgagagggccacgtgagccagttgtctctgtacaca
tcgccgtctctccccaacatcactctgggcctgccagccacgggcccctccagcgtggcg
tctggccagcaggatagtgacagactgggaatgcccgggttgcagccaggaatcccctta
accactccgttcatcaccggggcccacctgccttcctacctggcctccaccctcgaccga
gacgggggctccgcgcacaacccccttctccagcatatggtgctgctggagcagtcggca
gcccagaactccctcgtcgcaggcctgggggggctcccactgcagtcgccctccatccac
aagctgcgtcagcaccgacccctgggacgcacccagtcggcccccctgccccagaacgcc
caggccctgcagcagctggtggtccagcagcagcaccagcagttcctggagaaacacaag
cagcagtttcagcagcagcagctgcacatcagcaagatgatggccaagccgagcgagccg
agccggcagcacgagagtcacccggaggagacggaggaggagctgcgggagcaccaggcg
ctgtcggacgagggtctgccgcgcggcgtcaccgtcaagcaggagccgcccgacgaacag
gacgaggagctgcagcagagggacaggcaggtcgaacaggaactcatcttcagacagcag
gcactcttactggagcagcagcggatccaccagctcagaaactatcaggcctccatggag
gcggccggcttatcggtcaccttccccggccaccggcccctctcccgcgcccagtcctca
ccggcctccgccaacttccccatcgtggtgcaggaaccccccaccaagccccgcttcacc
acagggctggtgtatgacactctgatgcagaagcaccaatgcatgtgtggcaacaccaac
acacacccggagcatgcgggacgcatccagagcatctggtcccgtctgcaggagacagga
ctgcggggcaagtgtgagtgtatccgcggcaggaaggccactctggaggagctgcagacg
gttcactcagaggctcacgtgctgctctacggcaccaacccactgcggcagaaacttgac
agctcagtgacacccatgtttgtgcggctgccctgtggcggaatgggggttgatagtgac
accatctggaatgaggtgcactcctccagtgcagcgcgtctggctgtgggctccgtggtg
gagctggtcttcaaggtggccgccggagaactgaagaatggctttgctgtggtgcgaccc
ccaggacaccatgcagaggagagcacccccatgggattctgctatttcaactcggtggcc
atcgcagcgaagcttctgcagcagaggctcaacgtgagcaaggttctgatcgtggactgg
gatgtccaccatggcaacggaacccagcaggccttctacagtgaccccaacattctatat
gtgtctctccatcgctacgacgatggaaacttcttccccggcagcggagcacctgatgag
gtgggcagcgggccaggcgtgggcttcaatgtgaacatggccttcaccggtggcctggac
ccacccatgggcgacgccgactacctggcagctttcagaacggtggtgatgcccatcgcc
aatgagtttgccccggacgtggtgttggtctcgtcaggtttcgacgccgtggagggccac
cccccacccttgggaggatactgcctcaccgccaaatgttttggctacctgaccaagcag
ctgatggggctggccgggggccgtctggtgctggctctggaaggggggcacgacctcacc
gccatttgcgatgcctccgaagcatgtgtttctgctttgctgggaaacgagctggagcca
ctccctgaggaggtgttgcagcagagacccaatcccaatgctgtgcactctatggagaag
gttctggaaactcagagtaaatactggcgctgtctgcagcgttacgcctccacggtaggc
tactctctgttggaggcccagaggtgtgagactgaagaggctgagactgtcacggccatg
gcctccctgtctgtggccaacaagcagcttgggaagaggcctgaggatgagccgatggag
gaggaggcgccgttgtag
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