Cohnella herbarum: HH215_27730
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Entry
HH215_27730 CDS
T08421
Name
(GenBank) family 16 glycosylhydrolase
Organism
cheb
Cohnella herbarum
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CBM_4_9
F5_F8_type_C
Glyco_hydro_16
S-l_SbsC_C
SLH
CBM_6
Shr-like_HID
SKN1_KRE6_Sbg1
CBM_35_2
Endotoxin_C
CBM_35
GalBD_like
Motif
Other DBs
NCBI-ProteinID:
QJD86591
UniProt:
A0A7Z2VNH8
LinkDB
All DBs
Position
6533657..6542866
Genome browser
AA seq
3069 aa
AA seq
DB search
MRRNVSLLLLFMMLASVIQPSVAFGENKEPETKIGTGHWAEEALGKWKDLGLIQGDPSGN
LQPDRSITRAEFAALVNRLFNLTDTSGGNFADVRQGQWYADDMAKARTSGYLTGYADRTV
KPLSPITREEAVVVLQRVFKLDDSEVAATPLAFKDSDQISHYAKKAIAQLATLGYVSGYQ
DGTFKGKQSITRAEAVSIMNRIAPLIINKAGNVDVKNVEGNVLVNAAGVTLSNMKIAGDL
ILTEGIGEGDVILDNVTVTGNTFVQGGGENSIKAIDSKLNTVRISKRNHKIHFILLGSSS
ADRVYANSGTILDNATESGEGFGRIMIAKSLPSQAKVRFIGRFTKVDTEAGDGSNAEPID
ILIDGPVGELILNFKANIIVSPTGSIGNLKIGTMASGSTLEGKIEKIDNAADNVRYQGKI
LPKTEDATAVPSSAGGNSSGTGPNVAAFTAKASKGTAAGTTKVQATASSGLHLAVKVSHE
TIAEPVPGTKAPAGGTVINPYVAGSDIGGVDGVINKYAGVYLLDASHKVVKFQQVVLTEA
EIAPKQWNLVWDDEFDGVGIDQSKWNYVEKGDGFGNSELQYYTARTENARVEDGSLIIEA
RKENYQGQQYTSAKLTTEDKGHWTYGKYEVRAKLPKGQGIWPAIWMMPQDMDMYGTWPAS
GEIDIMELVGNEPGTVHGTLHYGTPHTSSGYSYSLPGGGAFADDYHIFTTEWEPGELRWY
MDGVLYAVQNDWFSLDGTQPADYTYPAPFDRDFYMQLNVAVGGIWPGSPDATTAFPQKML
VDYVRVYEMDPTYGYRQPAEERPGQRDQGSITPGKTPLADGNYIYNGTFDEDKPDVAGIP
EAANSDYWTFRVGNNGAATVGNDNGAMKINVSDTGDANYSTQLIQQPVPLRIGKFYKVSF
DAKASSERSIEVKLGSGGEGGWKDYAAQSFNLGTSMSRYEFVFKMQAFTHMNARLEMNLG
GSTGSVWLDNIKLVETAGQSEQNRIPLADGNYIYNGSFALGKGGMSYWTWLKNSSASATA
SVGITAESKPFKAAIMNGGSTPEAVQLVQDNIFLKGNAYYVVSFDGAAEQATAVQIDVVD
AVDGTNYSGVRTIPLGVDREKKQFYFRFDSAQDRNVKLRVLLGGGLSRWVTLDDFRIDER
NVNRISTDPVFIQAEHYFYQSGITVLSETNGSTSVESFGTGDSLEYLVDIAVSGNYQFAY
RAKSAGVGGAIQATTDEAAGGQTVIPDTSGNWQTVVSAPLALQAGVQMIKLKAIAGEMSL
NWFAIAQDGSNFSIDDSGNLIKNGKFNDDLAQWGFWTEASANVANDNGKLRVTANSVGGQ
SWSIQSTQSDISLAVNTFYTLSFDASASVNRRIGVAIENAVQNRLMPDKTIDLQSSMTRY
SFDFEMGAADPTGKLVFSLGNVGNAGSLGSHKIWIDNVKLQVTNKVAPLDAAIEPGTVPG
TTRVNAVPGSANHLAASIGNVSVPVPNYGDKLPDSANLVNPYLGGDNLFGANATTNKYLA
IYEADANNRIVKYKQFVLTEQDILPTEATDPAELLAIASIQPGTSHATTRINASAGGGNH
LVAKVSHQAIATPNKGDRVPSGGTVVNPYLSGSDLSGVDGTTNKYVALYEADAAQRVVKF
KLLELTAANIKSENWQMVWNDEFDDSGIDPAKWNYVQGGGGYGNQELQNYTNRADNVRIE
NGALVIEARKENYQGSSYTSAKLDTSGKAKWTYGRYEIKAQLPEGQGLWPAIWMMPEDMG
MYGTWPASGEIDIMEALGHEPSTIHGTLHYGVEHASSGQSYTLPGGQTFTSGFHTYAVEW
EPGELRFYVDDILFAVQNDWFAYNYENPDVYTYPAPFDRDFYMQLNVAVGGVWPGNPDAS
TVFPQKMLVDYVRVYQLDEEKYRKAPGQRPGPRDLSGITGTGKTPTADGNYVYNGAFDQN
APDVEGIPGTSNSDYWTFNNGTGFGAQATAAYDNGAMRVDISNGGGATYAVQLIQKPIPI
EMGKSYKISVDARASANRNIEVKTSQGGEGGWTDYGKGNMAVTTETKTYSYTFRMLSNTH
HTARLEINLGGSTGSVWIDNVRFEEVTDNTVVERPPLANGNYIYNGTFELGASYMGFWTF
EKNADAAATSKVDPHAGLREFHAAIDNGGNSESSVRLKQRGLHLVKDNWYKIQFKARSES
ARSIDVRIAGESARFALTSNDGVYSYIFKMNGNSDLNGELQFLLGGDGADVYIDDVEMKQ
YFPPLSKMLRGEDFETTEGVTMKPKTAGGHYVAFDDDSDFIESGIEIAETGEYVVSYKVS
AVAGGKSIGVELDGGAKRLLAVPNTHGYERWSVVTERVQLTAGLHTWKLSGKGVNLDWIE
FAPDLISNNAMDTVTDPWVLWVGTEDWAGFAAGSMAIDSGEMKIDIQNQGNQFWSIQFNQ
MGISLKQGKNYRLSFDARSTVNRQVRVSLEQDGGSPQYLLKTLDLGNGMTRYSYDFAMNQ
ISQENAKLNFVLGNVSGIVGAHQVYLDNVILSETGEVVPELGGGTMANLALNQTASASSG
NAALAFDGNLATRWESAQSDPQSIQVDLGSSQEIDYVKLDWEGAYGKAYSIDVSTNGSDW
TTVFLTSGGNGGLDEIRFHPVQARYVKVNGTARGTNYGYSLFEFAVYAHDAGYIVEPSAP
PALVADSTDAIIKHDTEIAFADNEQWRNSITSLSLNGTPLVNGMDYWIVPGKIQLKGTAT
PTAGDYEIRIQAIRYDDATVTQSISPIPPTVDLAVGKSATASSGDAASAFDGNDGTRWIS
DVSDPQWIRVDLGDVYDIGRVLLKWEGAYGKTYSVETSVNGTDWTEVYATNIGDGGVDTF
NFASAQARYVRLMGTERGTIYSYSLWSFEVYPYDPSGLMTPPALIADTTNNIVGEDVQIG
FSDDPAWRTAISDILIDNVSVIGSVYANVGSIEIPALLIPEAKDYDIQVVATGYSQASVV
QTVSAINLALSPGVTASASSGDASMAIDGNSVSRWESEHKVDPQWIMVDLKSSKTIQRVI
IDWEGARASSYKVEVSVDGAGWTEVYSTTTGSGAKDILTFGPVSGQYVRMTGTVRALPYG
YSIYEIAIY
NT seq
9210 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaaacgtgagtttattgctcttattcatgatgttggcgagcgtaatacagcct
tctgttgcctttggcgagaacaaggagccggagacgaaaatcgggacgggccattgggca
gaggaagccctcggtaaatggaaggacttaggcttgattcaaggtgatccgtcgggaaat
cttcagcctgacagatcgattacgcgtgccgaattcgcggctctcgttaatcggctcttt
aacctaacggatacaagcggcggcaatttcgccgacgttcggcaggggcagtggtacgcg
gacgatatggcaaaggcgagaacgtcaggttacttaaccggctatgccgacagaaccgtc
aaaccgctgagtcccatcacgcgggaagaagcggtggtcgtgcttcagcgggtatttaag
ctggacgattctgaggttgctgcgactccgttggcattcaaggattcggaccaaatcagt
cactatgcgaagaaggctatagcgcagttggctacgctcggctatgtttcgggttatcag
gacgggacgttcaaaggcaagcaatcgatcacgcgggctgaagcagtatccatcatgaac
cggatcgctcccctaatcatcaacaaagccggcaatgtggatgttaagaacgtagaagga
aacgtgctcgtaaacgcagcgggcgtcaccctaagcaacatgaagatcgctggagatctc
atcttaacggaagggatcggggaaggcgacgttatcctcgataacgtaaccgttaccggg
aacacattcgttcagggcggcggagagaatagcattaaggcgatagactccaaattgaat
accgtgagaataagcaagaggaatcataaaattcattttatacttctagggagctcgtca
gcagacagggtctatgcgaatagcggtacgattctggacaatgccacggagagcggagaa
ggcttcggacgaatcatgattgccaaatctttgccctcacaggcgaaggtgaggttcatc
ggccggtttacgaaggtcgatacggaagcgggagatggctcgaacgcggagccgatcgac
attctcattgacggaccggtaggcgagttgattttgaatttcaaagctaatattatcgtt
tccccaacaggctcgataggaaatctgaagatcggtacgatggcttccggttcaaccttg
gaagggaaaatagagaagatcgacaatgcggcggacaatgtccgatatcagggaaaaata
ttgcccaaaacggaggatgcgacggcggttccgtcctcagctgggggcaactcctcaggc
actgggcctaacgtagccgcgttcaccgcaaaagcaagcaaagggacggccgcgggaacg
accaaggttcaagccactgcttcttcaggccttcatctagcggttaaagtctctcatgag
acaatcgcggagcccgtcccgggaacgaaagcgccggcaggaggaacggtgatcaacccg
tatgtcgcggggagcgatatcggcggcgtcgatggagtcatcaataaatacgcgggcgtc
tatttgcttgatgcaagtcataaagtcgtgaaattccagcaggtcgtactgactgaggct
gagattgcaccgaagcaatggaatctcgtgtgggatgatgagttcgatggcgtcggcatc
gatcaaagcaaatggaactatgtggagaagggcgacggattcgggaatagcgagctgcag
tactacacggcccgtacagagaatgctcgggtagaggacggttcgttgattattgaagcc
cgcaaagaaaattaccaggggcagcaatatacgtcggccaagctgacgacggaggataaa
ggccattggacatacgggaagtatgaggtgcgcgctaagcttcctaaaggtcaagggatt
tggccggcgatctggatgatgcctcaggatatggatatgtacggtacatggccggcttcg
ggcgagatcgatatcatggagctggttggcaatgagccgggaaccgtacatggtacgctg
cattacggcacgcctcacacaagcagcggttattcctatagccttccgggcggaggcgcg
ttcgccgacgattatcatatattcacgacggagtgggagccgggagaattgcggtggtat
atggacggagttctgtatgccgtgcagaacgattggttttccttggatgggactcagcct
gcggattatacctatccagcgccgtttgaccgcgacttctacatgcaattgaacgtagcg
gtaggcggtatatggccgggaagcccggatgctacgaccgcgtttccccagaagatgcta
gtcgattacgttcgcgtttacgagatggacccgacatacggctatcgccagcccgccgag
gaacgtccggggcaacgcgaccaagggagcataacgccgggtaaaacgccgcttgccgat
gggaactatatttataacggtaccttcgacgaggataagcccgatgttgcaggtattccc
gaagcggcgaattccgattactggacgttcagggtcggcaataacggcgctgcgaccgtt
gggaatgacaatggagcgatgaagatcaacgtctccgataccggcgatgccaattattcc
acgcagctgatccagcagcccgtgcctttgcggatcggcaagttttacaaagtgtctttc
gacgcgaaggcatcctccgaacgatcgatcgaagtcaagcttggcagcggcggcgaaggc
ggctggaaagattatgcggctcaatcctttaatctgggcacatcgatgtcgcgttatgag
tttgtgttcaaaatgcaagccttcacgcacatgaacgctcgtcttgagatgaaccttgga
ggcagcaccggctcggtgtggctggataatatcaagctcgtggagacggcagggcagtcg
gagcagaatcggattccgttagccgacgggaattatatatacaatggatcgttcgcgctg
ggcaaaggcgggatgagttattggacttggctgaagaatagctccgcgagcgcaaccgca
tccgtaggcatcacggcagagtcgaagcccttcaaggctgcgataatgaacgggggaagc
acgccggaagccgtccaactcgttcaggacaatatcttcctgaaaggaaatgcttattac
gttgtatcgttcgacggggcagcagagcaagctacggccgttcaaatcgacgtcgtcgat
gccgtcgacggtacgaactactccggtgtccggacgattccgctcggggtcgatcgggag
aagaagcaattttatttccgcttcgattccgctcaagatcgcaatgtgaaactgcgagtc
cttcttggcggtggcctgtcgaggtgggtcacgctggacgacttcagaatcgacgagcga
aacgttaatcgaatatcgaccgatccggtattcatacaagccgagcattatttctatcaa
agcgggattacggttttgtccgaaacgaacggaagcacttccgtcgaatcgttcggaacc
ggagactctttagaatatttggtcgatatcgcggtatcggggaattaccagttcgcttat
cgggcgaagtcggcaggggtaggcggcgctattcaggcgaccacggatgaggcagcgggt
ggccaaacggtgattcccgatacaagcggcaactggcagaccgtcgttagcgcgccgctc
gctttgcaagcgggcgtgcagatgatcaagctcaaagcgattgccggcgaaatgagcctc
aattggttcgcgatcgctcaagatggcagcaacttctccatcgatgactcgggcaatctg
atcaagaacggcaagttcaacgacgatctcgcgcagtgggggttctggacggaggcgtcg
gctaacgtagctaacgacaacgggaagttaagggtaaccgccaattccgtaggcggacaa
tcctggagcattcagtcgacgcaatccgatatttccttggcggtgaatacgttctatacg
ctttcttttgacgctagcgcatcggttaatcgaagaatcggcgtagcgatagagaatgca
gtgcagaatcgtctcatgccggacaagacgatcgacttgcagtcctcgatgacgcgctat
tccttcgacttcgagatgggagcagcagatccgactgggaagttggtgttttccttgggt
aacgtgggtaatgccggaagtttgggaagtcacaaaatatggatcgataacgtcaagctg
caagtgacgaacaaggttgcgccgcttgacgccgcgatcgagccgggtaccgttcccggt
acgacgagggttaacgcggtgccaggcagcgctaatcatctagcggcgtctatcggaaac
gtctccgtgccggtaccgaattacggcgacaagcttcccgattcggcaaatctggttaat
ccctatctcggcggggataacttgttcggcgcaaatgcgacaacgaataagtacttggcc
atctatgaggcggacgcgaacaaccggatcgtgaagtataagcagttcgtacttacggag
caggatatcctcccgactgaagctacggatcctgcagagctattggctattgcaagtatt
caaccgggtacgtcgcatgcgacgacccgaatcaacgcgagcgcgggagggggcaatcat
ctcgtcgctaaagtgtcccatcaagcgatagcgacgccgaataaaggggatcgcgttccg
tcgggcgggacagtagtcaatccttatctttcgggttcggatctgtccggcgtagatggg
actacgaacaaatacgtcgcattgtacgaagcggatgcagcccagcgcgtcgtgaaattc
aagctgctggaactaacggcggcgaacatcaaatcggaaaattggcagatggtgtggaat
gacgaattcgatgactcggggatcgatccggcgaaatggaattacgttcaaggcggcggt
ggatacggaaaccaggagctgcagaattacacgaaccgagcggacaacgtaaggatcgag
aacggggcgctcgtgatcgaagcgcgtaaagaaaactatcagggctcaagttatacatcc
gctaagctcgatacgagcggtaaagcgaaatggacttacggccgctacgagattaaagcg
cagttgccggaagggcaaggcctatggccggcaatctggatgatgccggaggatatgggg
atgtacgggacatggccggcatccggagagatcgatatcatggaagcgctggggcatgaa
ccgagtacgatccacggtacgttgcattacggagtcgagcatgccagcagcgggcaaagc
tacacgcttcccggcggccaaacgttcacaagcggttttcacacgtatgccgtagagtgg
gagccgggcgagctgaggttctacgtagacgacattctctttgcggtacagaacgactgg
tttgcatacaactatgagaatcccgacgtctatacttaccctgctcctttcgaccgcgat
ttctatatgcagttgaacgttgcggtcggtggcgtatggccgggaaatcccgatgcctca
accgtatttccgcagaaaatgctggtcgattacgtaagggtataccagcttgacgaagag
aagtaccgcaaggctccgggtcaacggccgggaccgagagacttaagcggcattacgggc
acgggcaagactcctacggcggacggtaactacgtgtacaacggagctttcgatcagaac
gcaccggacgtcgagggtatacccggaacctctaactccgattattggacgtttaataac
ggtaccggattcggagcgcaagcaacggcggcttacgataacggggcgatgcgagtcgat
atctcgaacggcggcggagctacgtatgccgttcagttaatccagaagccgatccctatc
gagatgggcaaatcctataaaatatccgtggacgcgcgagcttcggccaaccggaatatc
gaagtgaagacgagtcaaggcggagaaggcggatggaccgattacggcaaaggaaacatg
gcggtaacgacggaaacgaaaacttattcgtacactttccgaatgctctccaatacgcat
catacggcgcgtttggagatcaaccttggcggctcgaccggttcggtatggatagataat
gtacgcttcgaggaagtgacggacaatacggtcgtcgagagaccgccgcttgcgaacggg
aactacatttataacggcactttcgagctgggagcgagttatatgggcttctggaccttc
gagaaaaatgcggacgcagcagcaacaagcaaggtggatccccatgcggggcttcgcgag
ttccatgccgcaatcgataatggcggaaattccgagtcgtcggttcggttaaagcagcga
ggcttgcatctggtaaaggacaactggtataagatccagttcaaggctcgttccgaatcg
gctcgtagtatcgacgtccgaatcgcgggcgaaagcgctcggtttgcgcttacatcgaat
gacggggtatatagttatattttcaaaatgaacggaaattccgacttgaatggagaactg
caattcttgctcggcggtgatggcgcggatgtttacatcgacgatgtcgagatgaagcag
tacttccctccgttaagcaagatgctgcggggagaagacttcgagactacggaaggcgta
acgatgaagccgaagacggcagggggccattacgtagccttcgacgatgatagcgacttt
atcgagagcggcatagagattgcggagacgggcgaatacgtcgtttcttataaagtttcc
gccgttgccggaggcaagtcgattggggttgagcttgacggaggcgccaagcgactgctc
gctgtacctaacacgcatggttacgagagatggagcgtggtgacggagcgggtgcagctg
acggccggactgcatacgtggaagttatccggaaaaggcgtaaatctagattggatagag
ttcgcgccggatttgatcagtaacaatgcgatggataccgtaaccgatccgtgggtatta
tgggttggaaccgaagattgggctggtttcgcagccggttccatggcgatcgatagtggc
gagatgaagatcgatatccagaaccaagggaatcaattctggagcatacagttcaaccag
atggggatttctttgaagcaaggcaagaactataggctttccttcgatgcccggtctacg
gtaaaccgtcaggttcgcgtatccctggagcaggatggaggctctccgcaatatttactg
aagacgctagaccttggcaacggtatgacgcgatacagttacgacttcgccatgaaccag
atcagccaagagaacgctaagctgaatttcgtcttgggcaacgtgtccggtatcgtcggg
gcgcatcaagtatatctggacaacgtcattctgtcggagaccggagaagtcgttcccgaa
cttggcggaggaacgatggcgaacttggcgctcaaccaaacggcgtcggcttcaagcggt
aatgccgcgcttgctttcgacggcaatctcgcgacgcgctgggaatccgcgcaaagcgat
ccgcaatcgattcaggttgatctaggaagctctcaagaaatcgattacgtgaagctcgac
tgggagggggcgtacgggaaagcctattccatcgacgtctcgaccaatggttcggattgg
acgaccgtattcttaacgagcggcggcaacggggggctcgacgaaattcgattccacccc
gtgcaagcgcgttacgtaaaggttaacggaacggcacgcggaacgaattacggatattcg
ttgttcgaattcgccgtttatgcgcacgatgccggctatatcgtcgaaccatccgctccg
cctgcgctcgtggcggattctaccgatgcgattatcaagcacgataccgaaatcgcattc
gcggataacgagcagtggcgtaatagcattacttcccttagcctgaatggaacgccgctc
gtgaacggaatggattactggatcgtgccggggaaaatacagttgaagggaacggcgact
ccgacagccggagattacgagatccgtattcaagctatccgttatgatgacgcgaccgtc
acgcaaagcatttcgccgattcctccgacggtagatttggcggtcggcaagtcggcaacg
gcctccagcggcgatgccgcgtccgcgttcgacgggaacgacggaacgagatggatatcg
gacgtttccgatccgcaatggattcgcgtcgatcttggagatgtctacgatatcggcaga
gtattgctgaaatgggaaggagcctacggtaaaacgtatagcgtagaaacttccgttaac
ggaaccgactggacggaggtttacgctacgaatatcggcgacggtggagtggatacgttt
aatttcgcatccgctcaagcccgttatgttcgcttaatgggcacggagaggggaacgatc
tactcttactccctgtggagcttcgaggtgtatccttacgatccgagcggcttgatgaca
ccgcccgcgctcatcgcggacacaacgaataacattgtcggggaagacgtacagatcggt
ttctccgacgatccggcttggaggacggcgatctcggatattctcatcgataacgtcagc
gtgattggttcagtttacgcgaatgtcggaagcatcgagattccggccttgctaattccg
gaggcgaaggattacgacatccaagtcgttgctaccggttatagtcaagcatcggtcgta
cagacggtgtcggcaattaatctggctcttagcccgggcgttacggcatcggcttcctcg
ggagatgcgagcatggccatcgatggcaattccgttagcagatgggaaagcgagcataaa
gtagatccgcagtggattatggtcgacctgaagagcagcaagacgatccagcgggttatc
atcgattgggaaggcgccagagcttcgtcgtataaggttgaagtttccgttgacggagca
gggtggacggaagtttactcgacgacgaccggctccggcgcgaaggatattctcacgttc
ggcccggtctcgggacaatacgtgagaatgaccggaaccgtccgggcgctgccttacggc
tattccatatatgagattgcaatctattaa
DBGET
integrated database retrieval system
