Chromobacterium phragmitis IIBBL 112-1: DK842_11200
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Entry
DK842_11200 CDS
T05549
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
chri
Chromobacterium phragmitis IIBBL 112-1
Pathway
chri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DK842_11200 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chri03400
]
DK842_11200 (recD)
Enzymes [BR:
chri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DK842_11200 (recD)
DNA repair and recombination proteins [BR:
chri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DK842_11200 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
AAA_22
SH3_13
UvrD-helicase
T2SSE
SLFN-g3_helicase
Mg_chelatase
CbiA
nSTAND3
AAA_28
UvrD_C
AAA_16
AAA_24
AAA_25
FtsK_SpoIIIE
TrwB_AAD_bind
AAA_5
NACHT
GvpD_P-loop
AAA_7
ATPase
SRP54
Rad17
Motif
Other DBs
NCBI-ProteinID:
AXE30414
LinkDB
All DBs
Position
2343084..2344775
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AA seq
563 aa
AA seq
DB search
MRTDAPLLPAQLASLFQRLSPEVEDRVLALIGELGNANLAGHVCLPLAHRAESASLRNSP
LVGRPGDYAPLILDEAGRLYFARHWHDEDRLAQGLTRLAQPVPPPDEARLADLLSRLFPG
DGGQDRQKLAAALAARQRLMVISGGPGTGKTTTVVRLLALLAAMSPRPLVMAMAAPTGKA
AARLSESVRAARDRLDVDDAVRRQLPALAETLHRLLGLRPGAEAPRHHAGNPLPLDVLVV
DEASMIDLSLMARMVAALPSQARLILLGDRDQLSSVEAGAVLGELCGRIAYRADTVDWLR
RVAGGSLDGDAAPGGALTDCVALLTRSHRFGADSGIGELARRVNAGEGLASLLTLDDANW
PDVWRQEAACDADLLARRRGYLDAVAAGADADEVQRAFSAFMLLAAERRQVADCNRRVER
ELEAAGIKQPGRDWYPGRPVMIGENDYGLSLFNGDIGFALQRPSGLRVLFPSADGGWREF
SPGRLPAHETVFAMTVHKSQGSEYDEVWLQLPQQAGALLNRALLYTAITRARLRFAAVGD
ADVWLRGAELAPRRDSGLGDRLR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagaaccgatgcccccttgctgccggcccaattggcgagtctgttccagcgcctgtcg
cccgaggtggaggacagggtgctggcgctgattggcgagcttggcaacgctaatctggcc
ggccatgtctgtctgccgctggcgcaccgggcagagtccgcgtcattgcggaacagcccc
ttggtcggccgccccggcgactatgcaccgttgattctggatgaggccggcaggctgtac
ttcgcccgccactggcatgacgaggacaggctggcgcaggggctgacgcgcctggcgcag
ccagttccgccgccggacgaggcgaggctggcggatttgctgagccgcctgttccccggc
gacggcgggcaggaccggcagaaactggcggcggcgctggcggcgcggcagcggctgatg
gtgatttccggcggccccggcactggcaagaccacgactgtggtgcgtttgctggctttg
ctggcggcgatgtcgccgcggccgctggtgatggcgatggccgcgccgacaggcaaggcg
gcggcgcggttgtcggagtcggtgcgcgccgcgcgcgaccggctggacgtggacgatgcg
gtgcgccgtcagttgccggccctggcggaaacgctgcaccggctgctggggctgcgcccc
ggcgcggaagcgccgcgccaccatgccggcaatccgttgccgctggacgtgctggtggtg
gacgaggcgtcgatgatagacctgtcgctgatggcgcggatggtggcggcgctgccgtcg
caggcccggctgatcctgctgggcgaccgcgaccagctgtcgtcggtggaggccggcgcg
gtgctgggcgaattgtgcggccgcatcgcctaccgcgcggacaccgtagactggctgcgg
cgggtggctggcggcagtttggatggcgatgccgcgccgggcggcgcgttgaccgattgc
gtggcgctgctgacgcgcagccaccggttcggcgccgattcgggcatcggcgagctggcg
cggcgcgtcaacgccggggagggcctggcatcgctgctgacgctggacgatgcgaactgg
cccgacgtgtggcggcaggaggccgcttgcgacgccgatttgctggcgcggcggcgcggc
tatctggacgcggtggcggccggagcggatgccgacgaggtgcagcgcgctttttccgcc
ttcatgctgctggccgccgagcggcgccaggtggccgactgcaatcgccgcgtcgagcgc
gaactggaagccgcagggatcaagcaaccgggcagggactggtatccgggacggccggtg
atgataggcgagaacgactacggtttgagcttgttcaacggcgacatcggcttcgccttg
cagcggccgtccggcctgcgggtcctgttcccatccgcggacggcggctggcgcgaattc
tcccccggccggctgccggcgcacgagaccgtgttcgcgatgacggttcacaagagccag
ggctcggagtacgacgaagtgtggctgcagttgccgcagcaagccggcgcgctgctcaac
cgcgcgctgttgtacaccgccatcacccgcgcccgcctgcgtttcgcggcggtgggcgac
gccgatgtctggctgcggggggcggaactggcgccgcgccgggattccggcctgggcgac
cgattgcgttga
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