Chryseobacterium sp. T16E-39: CEY12_12005 Help Entry CEY12_12005       CDS       T04952                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism chry  Chryseobacterium sp. T16E-39 Pathway chry03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:chry00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     CEY12_12005 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:chry03400]     CEY12_12005 (ligD) Enzymes [BR:chry01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      CEY12_12005 (ligD) DNA repair and recombination proteins [BR:chry03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      CEY12_12005 (ligD) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme DNA_ligase_OB_2 Motif Other DBs NCBI-ProteinID:  ASK30791 UniProt:  A0A220SBC1 LinkDB All DBs Position 2657062..2658933 Genome browser AA seq 623 aa AA seqDB search MLAKSFEKAFDDQDWIFEIKWDGYRAIADLSHKAHLLYSRNGISFLAKFEKITQDFDQQK HTMILDGEIVAYDEKGKPNFQLLQQIGDNPNLALVYQVFDLLWLNGHSTEELPLLQRKEL LKEALVETEVIKYCDHIPEKGIEFFDQMKKMQLEGMIAKKTDSLYIENHRTSDWLKIKFT NTEEAIICGFTEPRGSREGFGALILGKYNQGKLIYSGHTGTGFNKETLTQLHQQLKKLII KSTPFDSAPKTNMPVTWVQPKLVCEIKYSEITKDGIFRHPVFIAIRQDKNPEEINDSTNK MDQPNEKPKRMKAKTPSKNTEKEITLDKHKVKLTNQDKIYFPEDGITKGDVIDYYQSIAK YILPYLKNRPLSLNRFPNGIEEQGFYQKDASDNIPEWIKTTEVYSESNDKYIDYIYCNDK ATLAYLNNLGCIDLNPWNSSIPDLEHPDYLVLDLDPSKKNTFDDVIETALQVNEVLLSIK VKGYCKTSGSTGIHIYIPMGAKYEFDQVKDFAHIVMKQVNEKLPKITTLERSLQKRDDKK IYLDYLQNRTGQTLASAYSLRPKQGASVSMPLDWNDVKPGLKPTDFNIHNSLERIKENGD LFKPVLGKGIDMMKALELLQNLK NT seq 1872 nt NT seq  +upstreamnt  +downstreamnt atgctcgcaaaatcatttgaaaaggcgttcgatgatcaggactggatttttgagatcaag tgggacggctacagggctattgctgatttaagccataaagctcatctgctttattcaaga aatgggatttcttttctggcgaaatttgagaaaattactcaggattttgaccaacaaaaa catacaatgattctggatggcgaaatcgtagcttatgatgaaaaagggaaacctaatttc caattactgcaacagattggagataatcccaatcttgctctcgtttatcaggtttttgat ttactttggctgaatggtcattctacggaagagctcccgttattgcaaagaaaagaactg ttaaaagaagcattagttgaaacagaagtgatcaaatactgcgaccatattccggaaaaa ggaattgaattttttgatcagatgaaaaagatgcagctggaaggaatgattgcaaagaag accgacagtctatacattgaaaatcacaggacttctgactggctaaaaattaaatttacc aataccgaagaggctatcatctgcggatttacagaaccgagaggttcaagagaaggattt ggagccctgattttaggaaaatataatcagggaaaactaatttattcgggacacacaggt acaggatttaataaagaaactttgacgcagcttcatcagcagttgaaaaaattaattata aaaagtactccatttgactctgctcccaaaacaaatatgcccgtaacatgggtacagcct aaacttgtctgcgaaattaaatactctgaaattactaaagacggaatctttagacatcca gtttttattgccattcgccaggataaaaatcctgaggaaattaacgattcaactaataaa atggatcaaccaaacgaaaaacctaaaagaatgaaagccaagactccatcaaaaaacacc gaaaaagaaattactttggataaacataaagtaaaattaaccaatcaggataagatctat ttcccggaagatggcatcactaagggagatgtgattgattattatcagtcaatagctaaa tacatattaccctatctcaaaaatcgtcctctgtcactgaaccgttttccaaatggaatt gaggagcagggtttttatcaaaaagatgccagtgacaacattccggaatggataaaaaca acagaagtctactcagaatctaatgacaaatacattgactatatttactgtaatgacaag gcgactttagcctatctcaataatctgggctgtatcgatctcaacccctggaacagctca atcccagatcttgaacatcccgactatttagtgctggatcttgatccttctaaaaagaat acatttgacgatgttattgaaaccgccttgcaagtgaacgaagtattgctttcaattaag gtgaaggggtactgcaaaacttctgggagcacaggaattcatatttatatccccatgggt gctaaatacgaatttgaccaggtaaaggatttcgcccatattgtgatgaaacaggtcaat gaaaaactgcccaaaataacaactttagaaagaagcttacagaaaagagatgataagaaa atttatctcgattaccttcaaaacaggacaggacagacattggcaagtgcatacagctta cgtccaaaacaaggagcttctgtttcgatgcctttggactggaacgatgtaaaaccagga ttgaaacctactgatttcaatatccataactcgttggaaagaattaaagaaaatggagat ttatttaaacctgttttgggaaaaggaattgatatgatgaaggcattggaactcctacaa aatttaaaataa

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