Chryseobacterium sp. 6424: CO230_07840
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Entry
CO230_07840 CDS
T05704
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chrz
Chryseobacterium sp. 6424
Pathway
chrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO230_07840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrz03019
]
CO230_07840
03009 Ribosome biogenesis [BR:
chrz03009
]
CO230_07840
Enzymes [BR:
chrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CO230_07840
Messenger RNA biogenesis [BR:
chrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CO230_07840
Ribosome biogenesis [BR:
chrz03009
]
Prokaryotic type
rRNA helicases
CO230_07840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AYO58041
UniProt:
A0A3G2TDC7
LinkDB
All DBs
Position
complement(1691707..1693419)
Genome browser
AA seq
570 aa
AA seq
DB search
MNLFTETNLSPEILKAIGELGYESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLP
ILDMIDDGSRKIQLLVLCPTRELCLQITKDIKNYSKYMPNLKTTAVYGGSSIMDQIRSLR
EKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILSETPDTKQT
YLFSATMNKEVERISKNYLTSPHRISVGSINEVKKNIKHEYYVVGYRHKKEALKRLIDAN
PNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEEQRKLKQIKST
TKIDIQEKKIPTGEAIIKAQVAGVFEELFTEHEEFFTFDDALIPDLSAFSKEELVHKLLQ
LQLRDLAMYYKDKNDLAEQKFNADDRGDSRRDRARDRDRDRGRDRDRGDRRENSREGGRE
ARDRKPKRNNGDMVRFFFNLGKKDHLKKIDMLDIINKSTSKSKKRPDIGEIEILEKFSFF
EVEKSYKDEVLRGLQTLKFKGKEMRAEVAN
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagccctgaaatcctgaaggcaattggcgaactg
ggctacgaaagccccacagaaatccaaaaacagaccattccattcatctctacagatatt
cgcgatcttatcgcacttgcgcagactgggacgggcaaaacagcagctttttcgcttccg
attttggatatgattgacgatggtagtcgcaaaatccaacttttggtgctttgtccgaca
agagaactgtgtcttcagattacgaaagacattaaaaattattctaaatacatgcccaac
ctcaaaactacagcggtatatgggggcagcagtattatggatcagatccgctcacttcgt
gaaaaaccacagatcatcgtgggaacaccgggccgtgtgatcgaccttatcaacagaaaa
gcgcttgatttttctgaaattcagtggctcgttttagatgaagctgatgaaatgctttca
atgggtttcaaagatgatttggaaaccatcttaagcgaaacgccggataccaaacagact
tatcttttctcagctacgatgaacaaagaggttgagaggatttcaaagaactatcttact
tcgccgcaccgtatttcggtaggttccatcaacgaggtgaagaaaaacatcaagcacgaa
tattatgtggtaggttaccgtcacaagaaagaagccttaaaaagacttatcgacgcaaac
cctaaccaatactcgattctcttctgtcgcacgcgtatggaaacgcaggaagtcgcggac
ttccttatgcagaacggctacgccgcggatgcgctacacggcgacctttcgcaggcgcag
cgtgacacggtgatgaagaaattcagactgaaaaacatcgatatccttgtagcaaccgac
gttgccgcgcgtggtttggatgtgaattctttgacgcacgtaatccattattcactccca
gatgaccctgaagttttcgttcaccgaagtggaagaaccggtagagcagggaaagacgga
atttcgatggcactcataaagccagaggaacagcgtaaactgaaacagataaaatctacc
acaaagattgatattcaggagaaaaagatccccaccggcgaagcgattatcaaagcgcag
gttgcgggcgttttcgaagaacttttcaccgaacatgaagaatttttcacctttgatgac
gccctgattccggatctttcggcgttctcgaaagaagaattggtgcacaagcttcttcag
cttcagcttcgcgacctagcgatgtattataaagacaaaaatgacctagcggagcaaaaa
ttcaatgcggacgaccgtggcgacagccgcagagatcgtgcgcgtgacagagatagagac
cgtggcagagaccgtgatcgcggagaccgcagagagaactcccgtgagggcggacgcgag
gccagagaccgtaaacccaaaagaaataacggcgatatggtaaggtttttcttcaatctt
ggtaagaaagatcatctgaagaagattgatatgctggatatcatcaacaaatcgacctcg
aaatcaaaaaaacgcccggatatcggtgagatagaaatcctggagaaattctctttcttc
gaagtggagaaatcttataaagatgaagtccttcgtggcctacaaacgcttaaattcaaa
gggaaggaaatgcgcgccgaggtggctaactaa
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