Cytophaga hutchinsonii: CHU_3168
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Entry
CHU_3168 CDS
T00385
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHU_3168 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chu03021
]
CHU_3168 (rpoC)
03400 DNA repair and recombination proteins [BR:
chu03400
]
CHU_3168 (rpoC)
Enzymes [BR:
chu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHU_3168 (rpoC)
Transcription machinery [BR:
chu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHU_3168 (rpoC)
DNA repair and recombination proteins [BR:
chu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHU_3168 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABG60408
UniProt:
Q11QA6
LinkDB
All DBs
Position
complement(3602773..3607089)
Genome browser
AA seq
1438 aa
AA seq
DB search
MAFRKNKKLNNDFTKVTISLASPESILEGSHGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYMLGLPTKKLDQIIYYERYVVIQSGVKSEDGINYLDFLTEDEYLDILDKLPRENQLLDD
KDPNKFIAKMGADALETLLSRLNLDELSYSLRHAAANDTSQQRKAEALKRLKVVEAFRDA
RSRIENKPEWMIIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKINAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKMHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPILLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGHEAILEASLLMIASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSTPEHPIK
GEGMAFYGAEEVVIAINEGRLSQHAHIKVKGIVRTDAGELVEQMIDTVAGRVLFNLVVPE
EVGFVNELLTKKKLQLIIGMVFKIAGMSKTAKFLDDIKQIGFQMAFRGGLSIGLDNIGIP
ADKNTLIDGAKKEVDSVWSNYLMGLITDNERYNQVIDIWTRVNSEITDTLMKQLEADQQG
FNPIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVAQDAIINEQDCGTLRGLTVSALKDNDDI
VEPLTERILGRVSVHDVFHIISNELLVSSGQEITEEIARSIDDSGIESVEIRSVLTCESR
RGCCAKCYGRNLSSGQMVGIGESVGVIAAQSIGEPGTQLTLRTFHVGGTASNITVDANIK
AKFDGVVAFDDLRVIQSTNLEGDKVTVVMGRSGEIRIVEPVSGKTLLSNHVPYGAFLNVK
DGETVKKGQELCFWDPYNAVILSEFEGTIQFDSIEEGVTYREESDEQTGHREKVIVDTKD
KTKNPAIIVNHKKGEPKGYSIPVGAHLAVEDGQDVKPGQVLVKIPRSVGKTRDITGGLPR
VTELFEARNPSNPAVVSEIDGIVTYGAIKRGNREIFIESKDGVKKRYMVPLSKHILVQDN
DFIRSGNPLTDGAITPSDILSIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIEIIVRQMM
QKVQIIEAGDTSFLTNQAVDRFKFREENDNILDKKVVVECGDSEKLRPGMIITARQLRDE
NSSLKRKDQRLVVVRDAEPAVSMPTLQGITQASLDTESFISAASFQETTKVLSEAAVRGK
VDFLKGLKENVIVGHLIPAGTGQRVFNDIIVGSKEEYDSLIASKEAFNAARKGELQQS
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagaaaaaacaaaaaactgaataacgatttcacaaaagtaaccatcagtctt
gcttctccagaatcaattcttgaaggctctcatggtgaggttacacaaccggaaacaatc
aactacagaacatacaagccagagatgggtggtttgttctgtgagcggattttcggtccg
gtaaaagactgggaatgtcactgcggtaaatacaaacgtattcgttacaaaggcattatt
tgtgatcgttgcggggttgaagtaacagagaaaaaagttcgtcgtgaacgtatgggtcac
atcgaattagttgtacctgtagcacacatctggtatttccgttcattaccaaacaagatc
ggttacatgttaggtttacctacaaagaaacttgatcagatcatatactacgaacgttat
gttgttattcaatcaggtgttaaatctgaagacggtatcaactaccttgatttccttact
gaagatgaatatctggatatcttagataaacttcctcgtgagaatcaattattagacgat
aaagatccaaataaattcatcgctaagatgggtgcagacgcgttagaaacacttctttcc
cgtttgaacttagatgaattatcatacagcttacgtcatgcggcagcaaacgacacttct
cagcaacgtaaagcggaagcgcttaaacgtttgaaagttgttgaagctttccgtgatgca
agatcccgtatagaaaacaaaccggaatggatgattatccgcatggttcctgtgattccc
ccggaattacgtccattagtgccgttggatggtggtcgtttcgctacatccgatttaaat
gatctttacagacgtgttattatccgtaacaaccgtttgaaaagattgatcgaaatcaaa
gctccggaagtaatcttacgtaacgaaaaacgtatgcttcaggaagcggtagattcattg
ttcgacaactcacgtaagataaacgctgtacgtgcagaaggtaacagagcattgaaatca
ctttcagatatgttgaaaggtaagcagggacgtttccgtcagaacttacttggtaaacgt
gtcgattactctggccgttctgtaatcgttgtaggacctgaattgaaaatgcacgaatgc
ggtcttccgaaagatatggcagctgaattattcaagccatttatcattcgtaagctgatc
gaacgtggtatcgtaaaaacagttaagtctgctaagaaaatagtggatcgtaaagatccg
gttgtttgggatattcttgaaaacgtattgaaaggtcacccgatccttttaaaccgtgct
cctacacttcaccgtttaggtattcaggcattccagccaaaattgattgaaggaaaagca
attcagttacaccccttagtgtgtactgccttcaacgccgatttcgatggtgaccagatg
gcggttcacgttccactgggacatgaggctattcttgaagcatcattattgatgattgca
tctcataacatcctgaaccctgcgaatggtgcgccaattacagtaccatctcaagacatg
gttcttggattatattatgtaacaaaaggccgtaagtctacacctgagcacccgatcaaa
ggtgaaggtatggcattctacggtgctgaagaagttgtgatcgctatcaacgaaggtcgc
ttatcacaacatgcacatatcaaagttaaaggtatcgtacgtacagatgccggtgaatta
gttgaacaaatgattgataccgttgccggtagagtattgttcaacttagtagttccggaa
gaagtaggtttcgtaaacgaactgttaacgaagaaaaaattacagttgatcattggtatg
gtattcaagatcgctggtatgtctaaaactgcgaagttcctggatgatatcaagcagatc
ggattccagatggccttcagaggtggtctttctatcggtttggataacattggtatcccc
gctgataaaaatacattgatcgatggcgctaagaaagaagttgattcagtatggagcaac
tacttaatgggtcttatcacagacaacgaacgttacaaccaggttattgatatctggacg
cgtgtgaactctgagatcacagatacattgatgaaacagcttgaagctgatcagcaaggt
ttcaacccgatctacatgatgatgcactccggagcacgtggttctcgtgagcagatccgt
caattaggtggtatgagaggtttgatggctaagccacaaaagaacttacaaggttcagtt
ggtgagatcatcgaaaacccgatcctttccaacttcaaagaaggtctggatgtaatcgaa
tactttatctctacacacggtgctcgtaaaggtcttgccgatacagcccttaaaacggcc
gatgcaggttacttaacacgtcgtttggttgacgtcgcacaagatgcaattatcaacgaa
caggattgcggtacattaagaggtcttacagtttctgcattaaaagacaacgacgatatc
gttgaaccgttaacagaacgtatccttggtagagtaagcgttcacgatgtattccatatt
atttcaaatgaattgttggtttcttccggacaggaaattacagaagaaattgcaagaagc
atagatgattcaggcattgaatctgttgaaatcagatccgttcttacgtgtgaatcaaga
agaggatgttgtgcaaaatgttacggtagaaacttgtcatccggtcaaatggttggtatt
ggagaatctgtaggtgttatcgcagcacaatccattggtgaaccaggtacacagttaaca
cttcgtacattccacgtgggtggtacggcatctaacattactgttgatgcaaacatcaaa
gctaagtttgatggtgtagttgcttttgatgatttaagagtaattcaatctacaaactta
gaaggcgataaagtaactgtagtaatgggccgttcaggtgagattcgtatcgttgagccg
gtatctggcaaaacgttattgagtaaccacgttccatacggtgcattcttaaatgtgaaa
gatggtgaaacggttaaaaaaggtcaggaactttgcttctgggatccatataacgctgtt
atcttatctgaattcgaaggtacaatccaattcgattcaatcgaagaaggtgtaacatac
cgcgaagaatctgatgaacagactggccacagagaaaaagttattgttgatacaaaagat
aaaacgaaaaaccctgcaatcattgtaaaccataagaaaggcgaaccaaaaggatacagc
atcccggtaggcgcccacttagcagttgaagatggacaggatgttaaacctggtcaggta
ttagttaagatccctcgttctgttggtaaaacaagagatattacgggtggtcttccacgt
gtaactgaattgttcgaagcacgtaacccttctaatcctgctgtagtaagtgagattgat
ggtatcgtaacgtacggcgcaattaagagaggtaacagagagatctttattgaatcaaaa
gatggtgttaaaaagagatacatggtaccgctttccaaacacatccttgttcaggacaac
gatttcatccgttcaggaaatccgttgacagatggagcaattactccatcagatatctta
tcaatcaaaggacctacagctgttcaggaatatcttgtaaatgaaattcaagaagtatac
cgtctgcaaggtgtaaaaatcaatgataaacacattgagattattgttagacagatgatg
caaaaggttcagattatcgaagccggggatacatctttcttaacaaaccaggcagtggat
cgtttcaaattcagagaagaaaacgataatatcctggataagaaagttgttgtagaatgt
ggcgactcagaaaaattaagaccaggtatgatcattactgcacgtcagttaagagacgaa
aactctagcttgaaacgtaaggatcaacgtttggtagtagttagagatgctgaaccagca
gtttctatgccaacacttcaaggtattactcaagcttctttggatacagaaagtttcatc
tctgcagcgtcgttccaggaaacgacaaaagtactcagcgaagcagcagtaagaggaaaa
gtagatttcttaaaaggcttgaaagaaaacgtaatcgtaggtcacttaatccctgcaggt
acaggtcagcgtgtattcaatgacattatcgtaggatcaaaagaagaatacgatagtttg
atcgcttcgaaagaagccttcaatgctgcccgcaaaggcgagttacaacagagttaa
DBGET
integrated database retrieval system
