Capra hircus (goat): 100860828
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Entry
100860828 CDS
T02910
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
chx
Capra hircus (goat)
Pathway
chx04151
PI3K-Akt signaling pathway
chx04510
Focal adhesion
chx04512
ECM-receptor interaction
chx04611
Platelet activation
chx04820
Cytoskeleton in muscle cells
chx04926
Relaxin signaling pathway
chx04933
AGE-RAGE signaling pathway in diabetic complications
chx04974
Protein digestion and absorption
chx05146
Amoebiasis
chx05165
Human papillomavirus infection
chx05205
Proteoglycans in cancer
chx05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100860828 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100860828 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100860828 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100860828 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100860828 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
100860828 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
100860828 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
100860828 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100860828 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
100860828 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100860828 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100860828 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
chx00536
]
100860828 (COL1A1)
Glycosaminoglycan binding proteins [BR:
chx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100860828 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
100860828
NCBI-ProteinID:
XP_017920382
EnsemblRapid:
ENSCHIG00000021319
UniProt:
A0A452FHU9
LinkDB
All DBs
Position
19:36105883..36123687
Genome browser
AA seq
1463 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQEEGQEEDIPPVTCVQNGLRYHDRDVWKPVPCQI
CVCDNGNVLCDDVICDELKDCPNAKVPTDECCPVCPEGQESTTDQETTGVEGPKGDTGPR
GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGISVPGPM
GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP
GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM
GPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR
GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ
GPSGPPGPKGNSGEPGAPGSKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPAGLP
GPPGERGGPGSRGFPGSDGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLT
GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP
GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ
GVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQ
GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDK
GETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP
GPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA
GKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVV
GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE
GSPGRDGAPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPV
GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR
GPPGSAGTPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFL
PQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRD
LKMCHPDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKDK
RHVWYGESMTGGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQT
GNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIID
VAPLDVGAPDQEFGFDIGSVCFL
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaagaggagggccaggaagaaggccaagaagaagacatcccaccagtcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgtgccctgccagatc
tgtgtctgcgacaacggcaacgtgctgtgcgatgacgtgatctgcgacgaacttaaggac
tgtcctaacgccaaagtccccacggacgaatgctgccccgtctgccccgaaggccaggaa
tcaaccacggaccaagaaaccactggagtcgagggacccaaaggagacactggcccccga
ggcccaaggggacccgccggcccccctggccgagatggcatccctggacaacctggactt
cccggaccccctggaccccccggacctcccggaccccctggcctcggaggaaactttgct
ccccagttgtcttacggctatgatgagaaatcaacaggaatttctgtgcctggtcccatg
ggtccttctggtcctcgtggtctccctggcccccctggcgcacctggtccccaaggtttc
caaggcccccctggtgagcctggcgagcccggagcctcaggtcccatgggtccccgtggt
ccccctggcccccctggcaagaacggagatgatggtgaagctggaaagcctggtcgtcct
ggtgagcgcgggcctcccggacctcagggtgctcggggattgcctggaacagctggcctc
cctggaatgaagggacacagaggtttcagtggtttggatggtgccaagggagatgctggt
cctgctggccccaagggtgagcctggtagccctggtgaaaatggagctcctggtcagatg
ggcccccgtggtctgcctggtgagagaggtcgccctggagcccctggccctgctggtgct
agaggaaatgatggtgctactggtgctgctggcccccctggtcccactggccccgctggt
cctcctggtttccctggtgctgtgggtgctaagggtgaagctggtccccaaggaccccga
ggttctgaaggtccccagggtgtacgtggtgagcctggcccccctggccctgctggtgct
gctggccctgctggcaaccctggtgctgatggacagcctggtgctaaaggtgccaatggc
gctcctggtattgctggtgctcctggcttccctggtgcccgaggcccctctggaccccag
ggccccagtggcccccctggtcccaagggtaacagcggtgaacccggcgctcctggcagc
aaaggagacactggtgccaagggagaacccggtcccactggtattcaaggcccccctggc
cccgctggggaagaaggaaagcgaggagcccgaggtgaacctggacctgctggcctgcct
ggaccccctggcgagcgtggcggacctggaagccgtggcttccctggctctgacggtgtt
gctggccccaagggtcctgctggtgagcgcggtgctcctggccctgctggccccaagggg
tctcctggtgaagctggccgccccggtgaagctggtctgcctggtgccaagggtctgact
ggaagccctggcagcccgggtcctgatggcaaaactggcccccctggtcccgctggtcaa
gatggccgccctggacccccaggccctcccggtgcccgtggtcaggctggcgtgatgggt
ttccctggacctaaaggtgctgctggagagcctggaaaagctggagagcgaggtgttcct
ggaccccctggcgctgttggtcctgctggcaaagacggagaagctggagctcagggaccc
ccaggacctgctggccccgctggtgagagaggcgaacaaggccctgctggctcccctgga
ttccagggtctccccggccctgctggtcctcctggtgaagcaggcaaacctggtgaacag
ggtgttcctggagaccttggtgcccccggcccctctggagcaagaggcgagagaggtttc
cccggcgagcgtggtgtgcaagggccgcccggtcctgcaggtccccgtggggccaatggt
gcccctggcaacgatggcgctaagggtgatgctggtgcccctggagcccccggtagccag
ggtgcccctggccttcaaggaatgcctggtgaacgaggtgcagctggccttccaggccct
aagggtgacagaggggatgctggtcccaaaggtgctgatggtgctcctggcaaagatggc
gtccgtggtctgactggtcccatcggtcctcctggccccgctggtgcccctggtgacaag
ggtgaaactggtcctagcggcccagccggtcccactggagctcgtggcgcccccggtgac
cgtggtgagcctggtccccccggccctgctggcttcgctggcccccctggtgctgatggc
caacctggtgctaaaggcgaacctggtgatgctggtgctaaaggtgacgctggcccccct
gggcctgctggacctgctggaccccctggccccattggtaacgttggtgctcctggaccc
aaaggtgctcgcggcagcgctggtccccctggtgctactggtttcccaggtgctgctggc
cgagtcggtccccctggcccctctggaaatgctggaccccctggccctcctggccctgct
ggcaaagaaggcagcaaaggcccccgtggtgagactggccccgctgggcgtcccggtgaa
gtcggtccccctggtccccctggccccgctggtgagaaaggagcccctggtgctgacgga
cctgctggcgctcctggcactcctggacctcagggtattgctggacagcgtggtgtggtc
ggcctgcccggtcagagaggagaaagaggcttccctggtcttcctggcccctctggtgaa
cccggcaaacaaggtccttctggagcaagtggtgaacgtggcccccctggtcccatgggc
ccccctggattggctggaccccctggcgagtctggacgtgagggagctcctggtgctgaa
ggatcccctggacgagatggtgctcctggcgccaagggtgaccgtggtgagactggccct
gctggacctcctggtgctcctggtgctcccggtgcccctggccctgtcgggcctgctggc
aagagtggtgatcgtggtgagactggtcctgctggtcctgctggtcccattggccccgtt
ggtgcccgtggccccgctggaccccaaggcccccgtggtgacaagggtgagacaggcgaa
cagggcgacagaggcatcaagggtcaccgtggcttctccggtctccagggtccccctggc
cctcccggctctcctggtgagcaaggtccttccggagcctctggtcctgctggtccccgc
ggtccccctggctctgctggtactcctggcaaagatggactcaatggtctcccaggcccc
atcggtccccctgggcctcgaggtcgcactggtgatgctggtcctgctggtcctcccggc
cctcctggaccccctggtccccccggtcctcccagcggcggctacgacttgagcttcctg
ccccagccacctcaagagaaggctcacgatggtggccgctactaccgggctgatgatgcc
aacgtggtccgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcag
atcgagaacatccggagccctgagggcagccgcaagaaccccgcccgcacctgccgtgac
ctcaagatgtgccaccccgactggaagagcggagaatactggattgaccccaaccaaggc
tgcaacctggatgccattaaggtcttctgcaacatggagaccggtgagacctgtgtgtac
cccactcagcccagcgtggcccagaagaactggtacatcagcaagaaccccaaggacaag
aggcacgtctggtacggcgagagcatgaccggcggattccagtttgagtacggcggccag
ggctccgatcctgccgatgtggccatccagctgactttcctgcgcctgatgtccaccgag
gcctcccagaacatcacctaccactgcaagaacagcgtggcctacatggaccagcagacc
ggcaacctcaagaaggccctgctcctccagggctccaacgagatcgagattcgggccgag
ggcaacagccgcttcacctacagcgtcacctacgatggctgcacgagtcacaccggagcc
tggggcaagacagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgat
gtggctcccttggacgttggcgccccagaccaggaattcggcttcgacatcggctctgtc
tgcttcctgtaa
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