Citrus x clementina (clementine): CICLE_v10024686mg
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Entry
CICLE_v10024686mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03020
RNA polymerase
cic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CICLE_v10024686mg
09124 Replication and repair
03420 Nucleotide excision repair
CICLE_v10024686mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cic03021
]
CICLE_v10024686mg
03400 DNA repair and recombination proteins [BR:
cic03400
]
CICLE_v10024686mg
Enzymes [BR:
cic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CICLE_v10024686mg
Transcription machinery [BR:
cic03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CICLE_v10024686mg
DNA repair and recombination proteins [BR:
cic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CICLE_v10024686mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
18036941
NCBI-ProteinID:
XP_006425357
UniProt:
V4SDF7
LinkDB
All DBs
Position
Unknown
AA seq
1860 aa
AA seq
DB search
MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK
FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI
EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN
LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL
EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT
LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ
LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP
GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI
APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS
EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY
LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP
YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN
PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN
AGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSATKDDKNTKGDKSSR
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgatttccatactccccggcggaggtggccaaggtccgcatggtccagttc
ggcattctcagtcccgatgaaattaggcaaatgtcagtggtacagattgagcatggtgaa
actaccgagagagggaagccgaagccaggaggtttgagtgaccctaggcttggtacaatt
gacagaaagatgaagtgcgagacttgtacggccaacatggcggagtgccctggtcatttt
gggcatttggagcttgctaagccgatgtttcatatagggtttatgaagactgtgctcagc
atcatgcgatctgtttgcttcaattgctcaaaaattcttgctgatgaggacgatcacaag
tttaagcaagccttgaaaattaggaatcccaagaacaggcttaaaaagattttggatgca
tgcaaaaacaaaactaaatgtgagggtggtgatgagattgatgtacctggtcaagatggt
gaagaacctcttaaaaagaagaagggtggctgtggtgctcagcaaccaaagctgactatt
gaaggcatgaagatgattgcggagtacaaggctcagaggaaaaagaatgatgatcaggaa
caacttcctgaacctgttgaaagaaagcagacacttactgctgaaagggttcttggtgtt
ctaaagaggataagcgatgaggactgtcaactcttaggattgaatcctaagtatgctcgt
ccagattggatgattctgcaggttcttccaattcctccacctccagtgaggccctcggtg
atgatggatacctcctctaggagtgaggatgatttgactcatcaattggcaatgatcatt
cggcacaatgagaatttgaggagacaggagaggaatggggcacctgcacatatcatatcc
gagtttgcacaattgttgcagtttcacatagccacatattttgataatgaattgcctggg
cagccaagggctactcagcgatcaggtagaccgattaaatcaatctgtagtcggcttaag
gcaaaggaagggcgcatcaggggtaacttgatggggaagcgtgttgatttctctgccagg
acggttataacaccagacccgactatcaacattgatcagttgggggtgccatggagcatt
gcattaaatctgacttacccagaaactgttaccccgtataacattgaaaggttaaaagag
cttgttgaatatgggccccatcctcctcctggcaaaaccggtgccaaatatatcataaga
gatgatggtcaaaggctcgatctccgttacttgaagaaaagtagtgatcaccacttggag
cttggttacaaggtggagcggcatctcaatgatggggactttgttctttttaatcgtcaa
cccagtcttcataaaatgtcaattatgggacatagaatcaagatcatgccatactcaact
ttccgcctgaatctttctgttacatcgccatacaatgctgattttgatggtgatgaaatg
aacatgcatgtccctcagtcgtttgaaactagagcagaagttttggagttaatgatggtg
cctaaatgcattgtgtctcctcaatcaaataggcctgtaatgggcatcgtccaggataca
cttttgggatgccgtaaaattactaaaagagataccttcattgagaaggatgttttcatg
aacatattgatgtggtgggaggattttgatgggaaagttcctcaacccacaattttaaaa
cctcggcctctttggactgggaaacaagtttttaatctgatcatacctaagcaaataaat
ctattcagaacggctgcctggcatgcagacaatgacaagggtatactcactgcaggggat
accctagttcgaatagaaaaaggggagctgctttctggaacgctttgcaagaagaccctt
ggcacatccacaggaagtcttatacacgttatttgggaggaagttggtccagatgctgct
cgcaagttcttgggacatacacagtggcttgttaactattggcttttgcagaatgctttt
agtattggaattggagatacaattgctgatgcaaaaacaatggaaactatcaacgatacc
atttctaaagcaaagaataatgtgaaaaaccttattaagcaagcccaagacaaaagctta
gagcctgagcctggacggaccatgatggagtcatttgagaacaaagtgaaccaggttctg
aatacagctcgtgatgaagctggaagtagcgcgcagaagagtttatcagaaagcaataat
cttaaggcaatggtgacagctggatccaaaggaagtttcatcaatatatcacagatgact
gcttgtgtggggcagcagaatgtggaaggaaagcgtatcccatttgggtttgtagatcgg
acattgcctcattttactaaagatgattatgggccagaaagtcgagggtttgtggagaac
tcgtacctgcgtgggctgaccccacaggagttctttttccatgctatgggtggtagggaa
ggtcttattgatactgcagtgaagacttctgagaccggatacatccagaggcggctagtg
aaggcaatggaagatataatggtaaaatatgatggaactgtgaggaactcattgggtgat
gtaatccagtttctctatggcgaagatggtatggattcagtctggatagaatcacagaca
cttgattctttgaagatgaaaaagtcagaatttgataaggctttcagatttgagatggat
gaagaaaactggaacccgaattatatgctgcaagaatatattgatgatttgaaaacaatt
aaagaattacgagatgtttttgatgcagaagttcagaaacttgaagcagatagataccag
cttgcaacggagatagcaacctcaggtgatagttcttggccactccctgttaaccttaag
agacttatctggaatgcgcagaagactttcaaggttgatcctcgaaggccttctgatatg
catccaatggaagtagtcgaagctgttgataagctccaggagaggctgaaagttgttcct
ggtgaagatccattgagtgtggaagcccaaaagaatgccacccttttctttaatatcttg
ctccgtagcacttttgccagtaaaagggtgttgaaggagcacaggcttacccgtgaagcg
tttgagtgggttattggtgaaattgagtcacgattcttacagtcattagtagcacctggg
gaaatgattggctgtgttgctgcacagtcaattggtgaacctgccacccagatgactctt
aatacgttccattatgctggtgtgagcgcaaagaatgtcactctaggagttccaaggttg
agggaaattataaatgtggctaagaaaatcaaaactccttcactctctgtatttctgaaa
cctggcgttaactcaactaaggagagggccaagaatgttcaatgtgcactagagtacact
actctccgtagtgttactgaagctacagaagtatggtatgatccagatcccatgggcaca
attattgaagaggatgttgaatttgtcaagtcttactatgagatgccagacgaggacatt
gcacctgaaaaaatatctccttggttgcttcgcatagagctgaatcgggaaatgatggtt
gataagaaattaagcatggcagctgttgctgagaagataaatcaggagttcgatgatgat
ttgacttgcatattcaatgatgataatgctgataaactcatccttcgtattcgcataatg
aatgatgaagctccaaagggagaattgaatgatgaatcagctgaagatgatgttttcttg
aagaagattgagagtaacatgctgacagaaatggctcttcgaggtatccctgatatcaac
aaggtgtttattaaaaagggtaaaacaaccaaatatgatgataatgaaggatttaagtcg
gaagatgagtggatgctggatactgaaggtgtgaatcttttagccgttatgtgtcatgaa
gatgttgatgcgagaaggacaacaagcaatcacttgattgaaataattgaagtactagga
attgaggcagttcgtcgggcgctattggatgaattgagagtagttatatcttttgatggc
tcttatgtgaattaccgacatctggctatactttgtgatacgatgacctatcgaggccac
ttgatggccatcactcgtcatggcatcaacaggaatgatactggaccaatgatgagatgt
tcatttgaagaaacggttgacattcttcttgatgctgcagtctttgcagaatcagattat
ttgaggggggtcactgagaatataatgttaggtcagcttgcgcctattgggacaggagac
tgttcattgtatctcaatgatgagatgctgaaaaatgccatcgaacttcagcttcctagt
tatatggaaggtctggagtttggcatgacacctgctcgttctccggtgtctgggactcct
tatcatgatggcatgatgtctccaggttacttgtttagcccaaatctccgtctgtccccg
gtcacggatgcccagttttctccttatgttggtggaatggccttctctcctacttcatca
cctggatacagcccatcatcaccaggctacagtccgtcatctcctggatacagtcccacg
tcacctggatacagcccaacttcacctggatacagtcccacctcgcctggatatagccct
acctcaccaacttatagtccaagttctcctggttatagtccaaccagtcctgcctattct
cctaccagtccatcgtactcacctacttcaccaagctatagcccaacctccccaagttac
agcccaacatccccaagctacagcccgacctctccaagttacagccccacttctcccagt
tacagtccaacttcaccaagctatagccccacctcaccggcatatagccccacctcacct
gcatacagccccacctcacctgcatacagccccacttcaccatcgtacagcccaacctct
ccttcctacagcccaacatcaccttcgtacagccctacctcaccgtcatacagccccact
tctccatcgtacagccccacttcaccagcctatagccccacttctcctggttatagtcca
acttcaccaagttatagcccaacttcaccaacctatagtcctacatccccaagctacaat
cctcagtctgccaaatacagtccgtcgctggcctactcaccaagtagtccaagattatct
cctgccagtccgtacagccctacatctccaaattacagtccaacatcatcttcgtattca
ccgacatcgccctcttattctccttcgagcccaacatacagccctagcagcccatataat
gctggaggtggaaacccagactatagcccaagttcacctcagtatagtccaagtgctggg
tactctcccagtgcaccggggtattccccatcgtcgactagtcagtatacaccacaaaca
aatagagatgacagtgcgacgaaagatgacaagaacaccaaaggtgacaagagctcacgt
taa
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integrated database retrieval system