Citrus x clementina (clementine): CICLE_v10025231mg
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Entry
CICLE_v10025231mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
cic
Citrus x clementina (clementine)
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cic03041
]
CICLE_v10025231mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CICLE_v10025231mg
Spliceosome [BR:
cic03041
]
Complex C
Other components
Complex C specific factors
CICLE_v10025231mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
18036589
NCBI-ProteinID:
XP_006427449
UniProt:
V4UMQ8
LinkDB
All DBs
Position
Unknown
AA seq
588 aa
AA seq
DB search
MMEEEDDYVEYVPIAKRRAMEAQKILQRKGQASTLEDELEKSKLAEVKPSLLVKASQLKR
DQPEISPTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLLTGWKPPLPIRRMSKK
ACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKAKGIVQPTPIQVQGLPVVLSG
RDMIGIAFTGSGKTLVFVLPMIMIAMHEEMMMPIVPGEGPFCLIVCPSRELARQTYEVVE
QFLTPMRDAGYPDLRTLLCIGGVDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMNLDNC
RYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNV
GRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVE
AVAVHGGKDQEEREYAISSFKAGKKDLLVATDVASKGLDFPDIQHVINYDMPAEIENYVH
RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITN
ASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggaagaagatgattacgtcgagtatgttccaatcgcaaagcgacgagcaatg
gaagctcaaaaaatactccagcgcaaggggcaggcgtctacgcttgaggacgagcttgag
aagtctaaacttgctgaagtcaaacctagtcttcttgttaaagcatcccagcttaagcgt
gatcagcctgaaattagtcccacggaacagattgtgcaacaagagaaggagatgattgag
aacttgtcagataggaagacgctgatgtcagttcgggagttagctaaggggattacttat
acggatcctttgttgactggatggaaaccgccattgcctattagaagaatgtcaaagaaa
gcctgtgatttaattcgaaaacagtggcatattattgttgatggtgaagatattcctcca
ccgattaagaacttcaaggacatgaggtttcctgagccaattttgaagaagttgaaagcc
aaagggattgtgcaaccaaccccaattcaggtgcagggtcttcctgttgttctatctgga
agggacatgattggaattgcgtttacgggatcagggaagacattggtgtttgtattgcca
atgatcatgatagcgatgcatgaggagatgatgatgcctattgttcctggagagggtcca
ttttgtttaattgtatgtccatccagagagcttgcgaggcagacgtatgaggttgtagag
cagtttttgacgccaatgagggatgcagggtacccagacttaaggacgttgctttgtatt
ggtggagtggatatgcggtctcagttggaggttgtaaagaggggtgtacacatcgttgtt
gcaactcctgggaggttgaaggacatgctggcaaagaaaaaaatgaacctggataattgc
agatatttaactttggatgaggcagatagattggtggatttgggatttgaagacgatata
cgggaagtatttgatcacttcaaagctcaacgacagactcttttgttctctgctaccatg
ccaacaaaaatccagaactttgctagaagtgctttggtaaagcctgttactgttaatgtg
ggaagagctggagcagcaaatctagatgtgattcaggaagtggagtatgtgaaacaagag
gcaaagatagtgtatctacttgaatgcctacaaaagacaccacctcccgttttgatattt
tgtgagaacaaggctgatgttgacgacattcacgaatatctactcttgaaaggagttgag
gcagtggccgtacatggagggaaagatcaggaagagagagaatatgccatttcatccttt
aaagctggaaagaaagatttgctggttgctactgatgtcgcctcaaagggtctagatttt
cccgatattcagcatgtcattaattatgacatgcctgcagaaatagagaactatgtccac
agaattggacgaacgggaagatgtgggaagactggaattgcaacaacatttataaacaag
aaccaaagtgagacgacactccttgatttgaagcacctgctgcaagaagcaaaacagagg
attcctcctgtgctggctgagctaaatgatccgatggaggatgtggatgcaattacaaat
gcaagtggggtaaagggatgtgcatactgtggtgggcttggtcatcgtatccgtgattgt
cccaagttagagcatcagaagagcatggcgattgccagctctagaagggattattttggt
tctggaggttatagaggagaaatttga
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