Ctenopharyngodon idella (grass carp): 127502182 Help Entry 127502182         CDS       T08802                                  Name (RefSeq) collagen, type XI, alpha 1b   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism cide  Ctenopharyngodon idella (grass carp) Pathway cide04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cide00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     127502182  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cide00536]     127502182 Glycosaminoglycan binding proteins [BR:cide00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    127502182 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_1 Laminin_G_3 Motif Other DBs NCBI-GeneID:  127502182 NCBI-ProteinID:  XP_051730790 LinkDB All DBs Position 2:complement(16941565..17032258) Genome browser AA seq 1815 aa AA seqDB search MDKERWSTRWKTKKWLRNSALSAIFSLTFVLQATHVRAAEPVDVLKVLDFKSSPEGVKKT QGFCTIRRGSKPDVAYRVDKRAQLSSPTKQLFPGGVFPQDFSILMTIKPKAGIQSFLLSV YNEQGIQQLGVEVGRSPIFLYEDQHGKPAPEDYPLFRAINLADGKWHRVAISIEKKTVTM IVDCKKKISKPLSRSDHAIINTDGISVFGTRILDEEVFEGDIQQLLLVADPRAAYDYCEH YSPDCETPHQDTPQAQEPEEEYTEYTDYNEFYDYTEEVTATENPTDNVYTETKPSTAETG DYYVEQDYATEAPSISIPAKENPLPKEEIVDDYVTGIEEVGVDPTIATNENVEIVESKNT NAAETQDFKEYDINEYDGKELDPSNYDDTFYEYNTNTNGGNPTGSTYEEEFGPGRPAETE VTESNVGGGYGGEKGQKGEPAVIEPGMLVEGPPGPPGPAGLPGTPGIQGSPGLHGDPGER GPPGRPGLPGADGAPGPSGTILMLPFRAGGESSKGPVVTAQEAQAQAILAQARLTMRGPP GPMGLTGRSGPVGGPGAPGAKGESGDSGPQGPRGLQGPTGSPGKPGKRGRNGADGARGIP GESGAKGDRGFDGLPGLPGEKGHRGETGPIGLPGPPGEDGPRGEDGEIGQRGMPGESGPR GLLGPRGSPGTAGQRGLPGLDGPPGPKGNMGPQGEPGPPGQQGNTGPHGLPGPQGPIGPP GEKGPGGKQGLHGLAGADGPPGHPGKEGPPGEKGAAGHPGPQGSIGYPGPRGVKGAEGVR GLKGGKGEKGEDGFPGFKGDMGLKGDKGEGGVLGPRGEDGPEGPKGKSGPTGEAGPMGTA GEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGSNGEKGGRGIAGKAGPRGQRGPTGPRGGR GARGPTGKPGPKGTSGNDGPSGGPGERGPQGPQGPVGLPGPKGPPGPAGKDGLPGHPGQR GETGFQGKTGPPGPGGVVGPQGSTGETGPVGERGHPGSPGPPGEQGLPGAAGKEGGKGDP GPQGISGKPGPAGLKGFPGQRGLPGAAGPSGLKGGEGPQGPPGPIGSPGERGAAGPGGPI GLTGRNGPQGPPGPAGEKGGPGEKGPAGPAGRDGIQGPVGLPGPAGPQGPPGEDGDKGEV GEPGQKGSKGDKGEHGPPGPGGPQGVVGAPGPAGSDGEPGPRGQQGMFGQKGDEGPRGFP GLPGPVGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGAPGPPGGIGAMGGN GEKGETGEAGNPGTPGEPGPGGPKGELGEKGEAGPPGAAGPAGARGPPGDDGPKGNPGPI GFPGDPGPPGEPGVGGLDGLAGDKGDDGEAGQPGPPGPSGEAGPPGPPGKRGPAGPAGTE GRQGEKGAKGEAGAEGPAGKTGPVGPQGPPGKSGAEGLRGIPGPVGEQGLPGAAGQDGPP GPLGPPGLPGLKGDPGTKGEKGHPGLIGLIGPPGESGEKGDRGLQGPQGLGGGKGDTGPV GAPGPLGPPGPPGIPGTQGQKGSKGSTGAAGQKGEPGLIGPPGPPGPAGDIIQPLPIQTS KKSRRSPDMQDDEAAGMIDYGMEGMEDVFGSLNNLKQDIERMKFPLGTEDNPARTCKDLQ LSQPDFPDGQYWIDPNMGCIGDAFKVYCNFTAGGETCIYPDKKSSGVRISNWPKESPGSW FSEFKRGKILSYVDIEEGSINSVQMTFLKLLSSSARQNFTYICHQSVAWYDAKADNYDKA LRFLGSNDEEMSYDNNPFIKVLSDGCSLKQGYSKSVMEINTPRIDQVPIIDVMLNDFGES SQRFGFEVGPVCFLG NT seq 5448 nt NT seq  +upstreamnt  +downstreamnt atggataaggaaaggtggtccacgagatggaaaacgaaaaagtggctcaggaactccgct ttaagtgcaatcttcagtctgacttttgtcctacaggcaacacatgtgagagcagctgaa cccgtggatgtgctcaaggtcttagactttaaaagttcacctgaaggagtgaagaaaaca caaggcttctgcaccatccggagaggatctaaaccagatgtggcctaccgagtggacaaa cgagctcaactcagctccccaaccaagcagctcttcccaggaggagtattccctcaggat ttctccatccttatgactatcaagccaaaggcaggaatacagtccttccttttgtcggta tacaacgagcagggcatccagcagctgggtgtggaggtgggccgctcaccgatcttcctg tatgaggatcagcatgggaaacccgctcctgaggattacccccttttccgtgcaatcaac ctcgcagatggaaagtggcaccgcgtggctattagcatcgaaaagaagaccgtcacaatg attgtggactgtaagaagaagatctctaaaccactcagcagaagtgaccacgcaatcatt aacacagatggcatctctgtcttcggcaccagaatcctggacgaggaagtttttgagggg gacatccagcagcttcttttggtggcagaccctcgtgcagcctacgactactgtgaacac tacagccctgactgtgaaaccccccaccaggacacaccacaggcccaggaacctgaggag gagtatactgaatacacagattataatgagttctatgactacacagaggaagtgactgcc actgaaaatcccactgacaacgtctatactgagaccaagcccagcactgctgaaacgggc gactattatgttgagcaggactatgccactgaagccccttccatttccattccagccaaa gagaatcctttgccaaaagaggaaatagtagacgactacgttacagggatagaagaagtt ggagtggatcccaccattgccaccaacgagaatgtggaaattgtggagtccaaaaacact aatgccgccgaaacccaggactttaaagaatacgacattaacgaatatgatggaaaagag ttagatcccagcaattatgacgatacattctatgaatacaatactaatactaatggaggc aatcccactggatcaacctatgaggaggagttcggaccaggccggcctgctgaaacggag gtcacagagagtaatgttggtggtggctatggtggtgagaaggggcaaaaaggtgaacct gcagtcattgagccggggatgcttgtagagggacctccaggaccaccagggcccgccggc ctccctggcactccaggcatacaaggctctccgggcctccacggagatcctggtgaaaga ggtcctcctggtcgtccgggtttgccaggcgcagatggagctccggggccctctggcact atccttatgttgcctttccgcgctggtggagaatcttcaaaaggtccagtggtgacggca caagaagctcaggcccaagccatccttgcccaggcccggttgactatgaggggaccacct ggtccaatgggattgactggacgctccggccctgtgggtggtcctggtgcacctggtgct aaaggggaaagtggagattctggcccacagggaccaagaggacttcaaggccctactgga tcacctggaaaaccaggcaagaggggccgaaatggagccgacggagccagaggaattcct ggagaatcaggagccaagggggaccgaggatttgatgggcttcctggcttacctggtgag aagggacacagaggtgagacaggtcccatcggcctaccaggccctccaggagaggatgga ccaaggggtgaggatggtgagatcggacagaggggaatgccaggagaaagtggtccaaga ggactgctgggccccagaggatctcctggtaccgctggacagcgtggtcttcctggattg gatggaccacctggccctaaaggaaatatgggtcctcaaggagagcctggaccccctggg caacagggtaacactggtccacatggtctgcctggtcctcaaggcccgattggtccacct ggagagaaaggtcctggtggaaaacaggggctccatgggctggctggggctgatgggcct cctggtcatcctgggaaagagggtcctcccggggagaaaggagcagctggccacccaggt ccccagggttccattggttatcccggcccccgaggtgtgaagggtgccgagggtgttcgt ggcttgaagggcggcaaaggcgagaagggagaagatggttttcctgggttcaagggcgac atgggcctcaagggtgacaagggagagggtggtgttttgggccccagaggagaagacgga ccagaggggcccaaaggtaaatcaggtcccaccggagaggctggtcctatgggcacggca ggagagaagggaaaacttggtgttccaggtttgcctggatacccgggaagacaaggtcct aagggctctactggtttccctggcttccctggatccaatggtgagaagggaggaaggggt atcgctggtaaagcgggtccaagaggacaaagaggtccaacgggaccccgtggtggaaga ggtgccagaggtccaacaggaaaacctggaccaaagggaacatcaggaaatgatggacca tctggtggcccaggagagagaggaccccaaggacctcagggccctgttggattaccaggc cctaaaggcccacctgggcctgctggaaaggacggattgcctggtcaccctggacagcga ggagagactggttttcaaggaaagactggacctccaggacctggaggtgttgttggccca cagggctctactggagaaactggtcctgttggagagagaggacatcctggatctccaggg ccccctggagagcaaggtcttcccggagctgctggcaaagaaggtggaaagggtgatcca ggtcctcaggggatttctgggaaacctggccctgccggattgaaagggttcccaggacaa agggggcttcctggcgcagcgggtccatctggtctgaagggaggcgagggtccacagggc ccacctggccccattggatcaccaggagagagaggagcagctggaccaggaggacccatt ggtctaacaggacgcaatggccctcagggacccccgggacccgctggagagaagggtggt ccgggtgagaaagggcctgctggtcctgccggtcgggatggcatccaaggtccagtcggt ctcccgggcccagccggacctcagggtccacctggagaggatggtgacaagggagaagtt ggagagccgggtcaaaagggaagcaaaggtgacaagggcgaacatggtccgccaggtcca gggggtcctcagggtgtagttggagctccaggtcctgctggaagtgacggagagcccggg cccagaggtcagcagggtatgtttgggcagaagggagatgaggggccccgtggtttccca ggtcttcccggtcccgtcggactgcagggtttaccaggaccaccaggggagaaaggagag aatggagacgttggcccaatgggtccacctggtcctcctggtcccagaggtcctcaaggt cctagtggagcagatggtgctcctggccctcctggaggtatcggcgcaatgggtggaaat ggtgaaaagggtgagactggtgaggcaggtaatccaggaacaccaggagagcctggccca ggcggacccaaaggtgagcttggagagaaaggagaagctggcccacctggagctgcagga cccgctggtgcaagaggaccccctggagatgatggtcccaaaggaaacccaggtcctatt ggcttccctggagatccaggtccccctggtgagcctggagttggtggactggatggcctt gctggagataagggagatgatggagaggccggtcagcctggtccaccaggtccatctggt gaagctggtcctccaggaccccctggaaagcgaggtcctgctggcccagctggtacagaa ggcaggcaaggagagaagggtgcaaaaggcgaggctggtgctgagggaccagcaggcaaa actgggcctgtgggcccccaggggcctcctggaaagtctggagctgagggcttacgtggc atccctgggcctgtgggtgagcagggacttcctggagctgctggccaagacggtcctcct ggaccattgggtcctcctggtcttcctggcttgaaaggtgaccctggtactaagggtgag aagggtcatccaggtctgattggtctgatcggtcctcctggtgagtcaggagagaagggt gaccgaggactgcaaggtcctcagggacttggtggaggcaagggtgacaccggtcccgtt ggtgctcctggtccactcggtcctccaggtcctcctggtattcctggcacacaaggacag aagggatccaaaggatcaactggtgcagctggccagaagggagagcctggcttgatagga ccaccaggtcctcctggcccagccggtgacatcatccagcccctccccatccagacaagt aaaaaatcgaggaggtcacccgacatgcaggatgatgaagcagcgggaatgatagattat ggtatggagggaatggaggatgtgtttggatccctcaacaacctcaagcaggacattgaa cgcatgaagttcccactgggaaccgaggataaccccgccagaacctgcaaagacctgcag ctcagccaaccagactttcctgatggacaatactggatcgatccaaatatgggatgcata ggagacgcctttaaagtgtactgtaacttcactgcaggaggagaaacttgcatttaccct gataagaaatcctcaggggttagaatatcaaactggccaaaggagtccccaggatcttgg ttcagtgaattcaagcgtggaaaaatcctgtcttatgtggatattgaggagggctcgata aactcagtccagatgacattcctcaagttgctcagctcttctgcccggcagaacttcaca tacatatgccatcagtctgtggcctggtatgacgccaaggctgacaactatgacaaggcg ctgcgcttcctgggctctaatgatgaggaaatgtcctatgacaacaaccccttcatcaag gttctttcagatggctgctcgctgaagcagggatattctaaatctgtgatggaaattaac actcctcgcatcgaccaggtgcccatcatcgatgtcatgttgaatgactttggggaatcc agtcaaaggtttggatttgaagtaggccctgtctgctttcttggctaa

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