Citrobacter sp. CRE-46: AN232_17400
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Entry
AN232_17400 CDS
T05520
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cie
Citrobacter sp. CRE-46
Brite
KEGG Orthology (KO) [BR:
cie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cie03019
]
AN232_17400
Enzymes [BR:
cie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AN232_17400
Messenger RNA biogenesis [BR:
cie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AN232_17400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
NTPase_1
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AWS96854
UniProt:
A0A2Z3X804
LinkDB
All DBs
Position
3503247..3507149
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQPKLTFTMLQQQLDSLMLRDRQRFARRLHGVKKVKNPDAQQAIYQEMAKEIEQAAGK
VVLREAARPVISYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELGRESQGDILIFMSGE
REIRDTADALNKLDLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCKVDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHVALLTGLLSHIGMKDADKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRSYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRDNLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQIEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDRDDW
HWDQVPDHLKITFRVVDDKNKKLQEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDRLIDAHGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMSGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAIDPHRDRAQMLKVDSVQQAWQQWFNKLPPARREDDD
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaaccaaaattaaccttcaccatgttgcagcaacagctggattcgctgatg
ctgcgtgacagacagcgttttgcccgccggctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcaaaagagatcgagcaggcagccggtaaa
gttgtgctgcgtgaagcggcgcgtccggtcatcagctacccggaaaacctgcctgtcagc
cagaaaaaacaggatattctggaagccattcgcgaccatcaggtggtgattgtggctggt
gagaccggttcaggtaaaaccacccagttgccgaaaatctgtatggagctggggcgcggg
gtgaaagggctgatcggccatactcagccgcgtcgtctggcggcgcgtaccgtggcgaat
cgtattgcggaagagctgcaaaccgagccgggcggctgtatcggctataaggtccgtttt
agtgatcatgttagtgacaacaccatggttaagctgatgacggacggtatcctgctggcg
gaaatccagcaggatcggctgctaatgcagtacgacaccatcatcatcgatgaagcgcat
gaacgcagcctgaatattgattttctacttggctacctgaaagaactcctgccgcgtcgt
ccggatctaaaaattatcatcacttcggcgaccattgacccggaacgcttttctaagcat
ttcaacaatgcgccgattatcgaagtctctggtcgcacctatccggtggaagttcgctat
cgcccgattgttgaagacgcagatgacaccgagcgtgaccagttgcaggcaatttttgat
gccgtagatgagttaggccgtgaaagtcagggcgacatactgatcttcatgagcggcgag
cgcgaaatccgcgataccgctgatgccctgaataagctggatttgcgtcacaccgaagtg
ctgccactgtatgcgcgtctctccaatagcgagcagaaccgtgtgttccagtcgcacagc
ggtcgtcgtattgtgctggccaccaacgtggcggaaacctcgctgaccgtaccgggcatc
aagtatgtcattgatcctggcaccgcgcgtatcagccgctacagctatcgcacgaaagtc
cagcgtttgccgattgaaccggtgtcgcaggcctctgccaaccagcgtaaaggccgctgc
ggtcgcgtttcggaagggatctgtattcgtctgtattctgaggacgacttcctgtcgcgt
ccggagtttaccgatccggagatcctgcgtaccaacctggcgtccgttattttgcagatg
accgcgctggggctgggggatatcgcggcgttcccgtttgttgaagcgccggataaacgc
aatattcaggacggggtgcgcctgctcgaagagctgggtgcgataaccaccgatgagcag
gcaaccgcttacaaattaacgccgttgggccgccagctgtcgcaactgccggtggatccg
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgtgtgcgtgaggcgatgatc
atcacctcggcgctgtccattcaggatccgcgcgagcgtccaatggacaagcagcaagct
tccgacgagaaacatcgccgcttccatgacaaagagtctgatttcctggcgtttgtgaac
ttatggaattacctcggcgagcagcaaaaagcgttgtcgtcaaaccagttccgccgtcag
tgtaaagtcgactttcttaattatctgcgcgtacgtgaatggcaggatatctacacgcaa
ctgcgccaggtggtaaaagagttgggcattccggtcaacagcgaacccgctgaatatcgg
gagatccacgtcgcattgttgaccggtttactgtcccatattgggatgaaagatgccgat
aagcaggaatttaccggtgcgcgtaacgcccgtttctcgatcttcccgggttccggttta
ttcaaaaaaccgccgaagtggacgatggtggcggagctggtggaaaccagccgcctgtgg
gggcgtattgccgcgcgtatcgatcccgaatgggtggaaccagttgcgcagcatctgatc
aaacgttcatacagcgaaccgcactgggaacgcgcgcagggcgcggtcatggcgacagaa
aaggtcaccgtctacggcttaccgattgttgctgcccgtaaggtgaactacagccagatc
gatccggcgctgtcacgtgaactgttcattcgtcatgcgctggtggagggcgactggcaa
acgcgccatgctttcttccgtgacaacctgaagctgcgggcggaggtggaagagttagaa
cataaatcgcgccgtcgcgacatcctggttgatgatgaaacgctgtttgagttttacgac
cagcgtattagccatgatgtgatttctgctcgccactttgatagctggtggaagaaagtt
tcccgcgagaccccggacctgctcaactttgaaaagagcatgcttatcaaagagggcgcg
gaaaaaatcagtaagctggattatccgaacttctggcaccagggcaatctcaaactgcgt
ttgagctaccagttcgaaccgggagccgatgcggacggtgtgaccgtgcatattccgctc
cctctgcttaatcagatcgaagagagcggttttgaatggcagattcctggcctgcgccgc
gagctggtgatcgccctgattaagtcgttgccgaaaccggtacgacgtaactttgttcct
gctccgaactatgctgaggcatttttaggccgcgtgacgccgctggaactgccgctgctg
gacgcgctggaacgtgaactgcgccggatgaccggcgtcaccgttgaccgcgatgactgg
cattgggatcaggtacccgatcacctaaaaatcaccttccgggtggtggatgacaagaac
aagaagctacaggaaggacgctcgctacaggatctgaaagacgccttgaagggtaaggtt
caggaaacgctgtccgcggtggcggatgacggtatcgaacagagcggattgcatatctgg
agcttcggacagcttccggaaagttacgagcaaaaacgcggtaactataaggtaaaagcg
tggccagcgctggtcgatgagcgtgacagcgtcgccatcaaattgtttgataatccgctg
gagcagcaacaggctatgtggtgcggcttacgccgcctgttgctgttgaacattccttca
ccgatcaaatacttacacgagaagttgcctaacaaagccaagctggggttgtattttaac
ccgtatggcaaagtgttggagttgattgacgactgtatctcctgcggtgtggatcggttg
atcgacgcccatggtggtcccgtgtggacggaagagggctttgcggcgttgcatgagaag
gtgcgggctgaactgaacgatacggtggtggatatcgcgaagcaggtcgaacagatcctc
accgcggtgtttaatatcaataagcgtctgaaagggcgtgtggatatgaccatggcgtta
gggctttcagatatcaaagcgcaaatgagcgggctggtgtaccgcggatttgtcactggt
aatggtttcaaacgcctgggcgatacgttgcgttatttgcaggctattgaaaaacgtttg
gaaaaactggccatcgatccgcaccgtgaccgtgcacagatgctgaaagtggatagtgtg
cagcaggcctggcagcaatggttcaataaactaccgcctgcgcgccgtgaagatgacgac
gtcaaagagatccgctggatgatagaagagctgcgcgtcagctactttgcccagcagctt
ggtacgccgtaccctatttcagataaacgtattctgcaggcgatggatcagatcacggga
taa
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