Carya illinoinensis (pecan): 122276359
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Entry
122276359 CDS
T08745
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122276359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cill03021
]
122276359
Transcription machinery [BR:
cill03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
122276359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DUF1258
Motif
Other DBs
NCBI-GeneID:
122276359
NCBI-ProteinID:
XP_042941938
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All DBs
Position
9:complement(11480802..11488063)
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AA seq
538 aa
AA seq
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MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTKAENHEKCYDCGATVTRLIREYN
VRASSSSDKNYFIGRFVTGLPNFSKKRSAENKWSLQKEGLQGRQLTDALREKYKNKPWLL
EDETGQFQFQGQMEGAPSATYYLLMMQGKEFAAIPAGSWYNFNKVAQYKQLTLEEAEEKM
NNRKRTADGYERWMMKAANNGSAAFGGVERSDDKDSGVAGGRARKKMTGDDEEGNVSDKG
EEDEEEEVARKNRLGLNKRSGDDDEEGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVG
NDPEEREELAPEVPAPPEIKQDEDDEDEDNGEEGGLSKSGKELKKLLGRTGGLNDSDAED
DDDDEEDMDDEIGVNPVLAPKQKDAPKEEPAENSPVKTIPSGPARGTPSTSKSAKAKRKL
NGDDAKVSNAAPPKKVKTENELKPSLKEETVPPPKSSVPSKATPSSKTGPTSSAGPVTEE
EIRAVLIQKTPVTTQDLVANFKARLRSPEDKKAFADILRKISKIQRTNGSNYVVLRER
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatctgctgttgaagccgtcgtgtagtgggtgtggatcgaccacggacttg
tacggaagcaattgcaagcacatgactttgtgcttgagctgtggcaaaaccaaggccgag
aaccatgaaaaatgctacgactgtggtgccacagtgacgcgtttgattcgagagtataat
gttcgtgcgagttctagcagcgacaagaattactttattggtagatttgtgaccgggttg
ccaaatttttcaaagaagagaagtgcggaaaataaatggtctctccagaaagaaggtcta
caaggacggcaacttactgatgctttacgggagaagtacaagaataaaccatggttattg
gaggatgaaacagggcaatttcagttccaaggtcagatggaaggtgcaccatccgctact
tactacttactaatgatgcaaggaaaggagtttgctgctattcctgctggttcttggtat
aacttcaacaaagttgcacaatataagcaacttacactggaggaagcagaagaaaagatg
aataaccggaaaaggactgccgatggatatgaaagatggatgatgaaagctgcaaataat
ggatctgctgcatttggtggagtggagaggtctgatgacaaagatagtggtgtggctggt
ggtagggcacgtaaaaagatgactggtgatgatgaagaaggtaatgtttcagataaaggg
gaggaggatgaagaggaagaggtcgcaaggaagaatagattgggactcaacaaaagaagt
ggtgatgatgacgaggaaggtccgagaggtggtgatcttgatttagatgatgatgatatt
gagaagggtgatgattgggagcatgaagaaattttcactgatgatgatgaagccgttggt
aatgatcccgaagaaagggaagaactggcccctgaagttcctgctcctccagaaattaag
caggatgaagatgatgaggatgaagataatggagaggagggtggactgagcaaatctgga
aaagagttgaagaagctgcttgggcgaactggtggacttaacgattcagatgcagaggat
gatgatgatgatgaggaagatatggatgatgagattggtgttaatcctgtgctggctcca
aagcagaaggatgcacctaaagaggaacctgctgaaaacagtcctgtaaaaacgatacct
tctggacctgctcggggaaccccatctacctctaagtctgcaaaggcgaagagaaaatta
aatggcgacgatgcgaaagtgtctaatgctgcacctccaaagaaggtgaaaacagaaaat
gaattaaaaccttctttaaaagaagaaaccgtgcctcctcctaaaagcagcgtgccttca
aaagctacaccatcatcgaaaactgggccaacatcatctgctgggcctgtcactgaagaa
gaaatcagagctgttttaatacagaagacacctgtgacaacacaggatcttgttgctaat
tttaaagcaagactaagatccccagaggacaagaaagcttttgcagacatcctgagaaaa
atttccaagatacagaggacaaatggatctaattatgttgttttgagagagcgatga
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