Carya illinoinensis (pecan): 122280642
Help
Entry
122280642 CDS
T08745
Name
(RefSeq) DNA mismatch repair protein MSH4 isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
cill
Carya illinoinensis (pecan)
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cill03036
]
122280642
Chromosome and associated proteins [BR:
cill03036
]
Eukaryotic type
Meiosis-specific proteins
Others
122280642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
AAA_14
AAA_27
AAA_22
Motif
Other DBs
NCBI-GeneID:
122280642
NCBI-ProteinID:
XP_042947552
LinkDB
All DBs
Position
11:25611012..25629108
Genome browser
AA seq
802 aa
AA seq
DB search
MEKDGGERSSFVVGLIENRAKEVGVAAFDLRLASLHLSQFIETSSSYQNTKTLLHFYDPL
VIIVTPNKLAPDGMVGVSDLVDRFYATVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL
DSYYKQYYLCLAAAAATIKWIEAEKGLIITNRSLSVTFNGSFDHMNIDATSVQNLEIIEP
LYSSLWGTSNKKQSLFHMLKTTKTIGGTRLLRANILQPLKDIETINARLDCLDELMSNEQ
LFFGLSQVLRKFPKETDRVLCHFCFKPKKITNEVLGVDYARKSQILISSIILLKTALDAL
PLLSKVLKDAKSFLLANIYKSVCENEKYASIKKRIGEVIDEDVLHARVPFVARTQQCFAV
KAGIDGLLDLARRSFCDTSEAIHNLANKYREDFKLPNLKLPFNNRQGFYYSIPQKDVQGK
LPSKFIQVLKHGNNIHCSTLELASLNVRNKSAAAECYIRTEVCLEALLDAIREDVSLLTL
LAEVLCLLDMIVNSFAHTISTKPVDRYTRPEFTDNGPMAIDAGRHPILESIHNDFIPNNL
FLSEASNMVIIMGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTLRVVDRIFTRMGAVD
NLESNSSTFMTEMKETAFVTQNVSERSLIVMDELGRATSSSDGFAIAWSCCEYLLPQKAY
TIFATHMENLSELATIYPNVKILHFQVDIRNNRLDFKHQLKDGPRRVPHYGILLAEVAGL
PSSVIETARSITYRITEKEVKRMEINYMQYHPVQMAYRVAQRLICLKYSSQDEDSIRQAL
QDLKEQYADGSIGLAIKHNSVL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggacggaggagaaagatcgagctttgtggtcggtctgatcgagaacagagct
aaagaagttggagttgctgctttcgacttgaggttggcttcactgcatctatctcaattt
attgaaactagcagctcgtatcagaacacaaaaactttgctgcatttctatgatccattg
gttatcattgttactccaaacaagctggcaccagatggtatggttggagtttcggacttg
gtggatagattttatgctacagtgaagaaggttgtaatggcccgtggttgctttgatgat
actaagggcgctgtgctgattaaaaatctagctgccaaggagccttctgcacttggtttg
gatagttattacaagcagtattatctctgtttggctgctgctgccgctactattaagtgg
atagaagcagaaaaggggcttattattacaaaccgctcattatcggttacctttaatgga
tcatttgaccacatgaacattgacgctaccagtgtccaaaatttggaaattattgagcca
ctttactcaagcctttggggcacaagcaacaaaaagcaaagtctattccacatgctaaag
acaacaaaaacaattggagggactagacttcttcgtgccaatattttgcagcctttaaaa
gatattgaaactatcaatgctcgccttgactgtctggatgagctgatgagcaatgaacag
ctattttttggactatctcaggttctgcgtaaatttccaaaagagactgatagagtacta
tgtcacttctgctttaagccaaagaaaattacaaatgaggtcttgggtgttgattatgct
agaaagagccaaatcttaatctcaagcattattctccttaaaactgctttggatgcgcta
cctttactctcaaaggtgcttaaggatgcgaaaagttttcttcttgcaaacatttacaag
tcggtatgtgaaaatgagaaatatgcatcaattaaaaagaggattggagaggttattgat
gaagatgtgctacatgcacgggttccatttgttgctcgcacacagcagtgttttgctgtc
aaggctggaattgatgggcttttggatttagcaaggaggtccttttgtgatactagtgaa
gccattcataatcttgcaaacaagtatcgtgaagatttcaaattgcccaatttgaaactt
ccctttaacaataggcaagggttctactatagcattccacagaaggatgttcaaggaaag
cttcctagcaagttcattcaggtcttgaaacatggcaacaatatacattgctcaactctg
gaacttgcttctttgaatgttagaaataagtctgcagctgcagagtgctatatacgaaca
gaagtttgcctggaagcacttttagatgccatacgggaggatgtctctttgctcactcta
cttgcagaggtattatgcctgttagatatgattgtcaactcatttgctcatacaatatcc
actaagcctgttgatcgatatactagaccagaattcacagataatggcccaatggcaatt
gatgctggaaggcatcccatcctggaaagcatacataatgacttcatccccaacaatctc
tttctctcagaagcatcaaatatggtgattataatgggcccaaacatgagtggaaagagc
acttatcttcaacaagtgtgtcttatagttattcttgctcagattggttgctatgttcct
gctcacttctcaactttaagggtggttgatcgtatatttacaaggatgggtgcagtggat
aatctcgaatcgaactccagtacattcatgacagagatgaaagagacagcttttgtaaca
cagaatgtctctgaaaggagtctgattgtaatggatgagcttgggagggctacttcttcc
tctgatggatttgcaattgcatggagctgctgcgagtatctattaccacagaaagcgtat
actatatttgctactcatatggagaatctatcagaattagcaaccatctatccaaacgtg
aaaattcttcactttcaggttgacattagaaacaaccgtctagatttcaagcatcaactc
aaggacggtccaagacgtgtaccacactatggcatattgttggcagaagtggcaggttta
ccaagctcagttattgaaacagccagaagcatcacataccggatcactgaaaaggaagtg
aagaggatggaaataaactacatgcagtatcatccagtccagatggcttaccgtgttgct
caacggctgatatgcttaaagtactccagccaagacgaggactcaattagacaagcattg
caggatcttaaagagcagtatgccgatggaagtatagggcttgctataaagcacaattcc
gtcttatga
DBGET
integrated database retrieval system
