Carya illinoinensis (pecan): 122281179
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Entry
122281179 CDS
T08745
Name
(RefSeq) uncharacterized PE-PGRS family protein PE_PGRS54-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03015
mRNA surveillance pathway
cill03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122281179
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122281179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cill03019
]
122281179
Messenger RNA biogenesis [BR:
cill03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
122281179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
122281179
NCBI-ProteinID:
XP_042948440
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All DBs
Position
11:complement(44587155..44591520)
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AA seq
721 aa
AA seq
DB search
MDEGLVRFGEGADQFHHNEAISAVADEGFLGEEDEDYEDLYNDVNVGEGFLQSLRKGEEL
DLRNEEEKKIESLPRAAADQDAVSIRGVGEGSGNGGVGDVGEVRLSGFQSDQGFRVNVVK
GTVGSGSGGIRVELGQGGITSKMNEVEEGNNITSGVQGIVGGQQSRGGGAVNVGSVGNGA
LVRHTGGGNVNGIGGDGVADSGGSGVGVGRGSGVGVGGGGGAGGIGGVSAGGGGGGGGGG
TILFVGDLHWWTTDAELESELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPAAATACKE
GMNGHMFNGRPCVVAFASPFSVKRMGEAQVNRNQQTAQAAQARRGPNDVPGKPGGSNNGS
SGNYQGGDNNNNRGYGRGNWGRGTAQGGMGNRGPAGPMRNRGGGMGGRGIMGNGGNGFVQ
GIGATPPLLHPQSMMGQGFDPAFGGPMGRMGGYGGFPGAPTPPFSGILSSFPHMGGVGLP
GVAPHVNPAFFGRGMPMNGMGMMPTPGIDVPNRGIWSDPSMGGWGGEEHGGGRAGESSYG
EEAASDHQYGEVNHDRAGWPNAVKEKDRGSERDWSGSSDRRYRDDRDPGYDREMPREKDM
DHDHDWSERRSRDDRDIGRERDRERSRDRERSRDRERSRDRDRDRDCERDRDRERDRDRY
REDKERQADHHRSRDQEVEHEDERERGRSSRTHSKSRLSQEERRSRSRDADYGKRRRLTS
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggtttggtaaggttcggggagggcgcggatcagttccatcataacgaggcg
atctcggcggttgcggacgagggtttccttggcgaagaggatgaagattacgaggatttg
tacaacgacgtgaatgttggggaagggtttttacaatctctgagaaagggcgaagaatta
gatttaaggaatgaagaggagaagaagatagagtcgttaccaagggcagcagcggatcag
gacgctgtatccatacggggcgtcggtgagggtagtggtaatggtggtgttggggatgtt
ggtgaggttaggctttctgggtttcagagtgatcaagggtttagagtgaatgtggtcaag
ggtacggttggatcggggagtggtgggattagggttgagttagggcaagggggaataacg
agtaagatgaatgaggttgaggaagggaataatattacttcaggggttcaaggtatcgtt
ggggggcagcaatcacgtggtggtggtgcagttaatgtaggtagtgtggggaatggggct
ttggtgaggcacactggtggaggaaatgtgaatgggattggtggtgatggagttgcagat
agtggtggtagtggtgtcggtgtaggaagaggtagtggtgttggtgtaggaggaggtggt
ggagctggtggtattggcggtgtcagtgccggaggtgggggtggaggaggaggtggggga
acgatactgtttgtgggtgatttgcattggtggactacagatgcggaattggaatcggag
ctgtgcaagtatggaccggtgaaggaggtgaagttttttgacgagaaagcgagtgggaaa
tcaaaagggtattgccaggttgagttttatgacccagctgcagcaactgcatgtaaggaa
gggatgaatggtcatatgtttaatggtaggccatgtgttgttgcatttgcatcgccattt
agtgttaagagaatgggggaggctcaagtgaatcgaaaccaacagacggcacaagctgct
caagcaagaagggggcctaatgatgttccaggtaagcccggtgggagcaacaatggatca
agcgggaattatcaaggtggggataataataacaacagaggttatgggagagggaattgg
ggaagaggtactgcacaggggggaatggggaatagagggccagctgggcccatgaggaat
aggggtggtgggatgggagggagaggtataatgggcaatggtggtaatgggtttgttcag
ggtattggtgcaaccccacctttgttgcatcctcagtctatgatgggtcagggttttgat
ccagcatttggtgggcctatggggagaatgggtggttatggaggctttccaggtgctcca
acacctccattctccgggattttgtcttcgttcccccatatgggaggtgttggtttgcct
ggagtagcccctcatgtgaatccggcattctttggcagagggatgcccatgaatggaatg
gggatgatgccaacgccaggcattgatgtgcctaacaggggaatatggtcagatcctagt
atgggtggatggggtggcgaggagcatggtggtgggagagctggagagtctagttatggg
gaggaagctgcatctgaccatcaatatggtgaggtcaatcatgatagagcaggttggcca
aatgctgtgaaggaaaaggatagaggttcagaaagggactggtctggatcttctgataga
aggtatcgagatgatagagatccaggttatgatcgggaaatgcctagagaaaaagatatg
gaccatgaccatgactggtctgaaagaaggagccgtgatgatagagatattggtcgagaa
cgggatcgagagcgctcacgggatcgagagcgttcccgggatcgagagcgctcccgggat
cgggatcgggatcgggactgtgagagggatcgtgatagagagcgtgaccgtgacaggtat
agagaagacaaagagaggcaggcagatcatcataggtccagggaccaagaagtggagcac
gaggatgaacgtgaaagaggtcggtcttcaaggactcacagcaagtcacggttatcacaa
gaggaaagacgttcaagatcaagggatgctgattatgggaagagacggaggcttacctcc
gaataa
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