Carya illinoinensis (pecan): 122300576
Help
Entry
122300576 CDS
T08745
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
KO
K12857
Prp8 binding protein
Organism
cill
Carya illinoinensis (pecan)
Pathway
cill03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cill00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122300576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cill03041
]
122300576
Spliceosome [BR:
cill03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122300576
Complex C
U5 SnRNP specific factors
122300576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
NBCH_WD40
ANAPC4_WD40
eIF2A
RMC1_N
Nbas_N
Nup160
Motif
Other DBs
NCBI-GeneID:
122300576
NCBI-ProteinID:
XP_042967269
LinkDB
All DBs
Position
2:complement(26538837..26544428)
Genome browser
AA seq
345 aa
AA seq
DB search
MEVIPAWGENALSMAGPRPMEWSTVPYSGPQAPGPNGKQRTSSLESPIMLLMGHQSAIYT
MKFNPAGTVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTSDGSQMISASPDK
TLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFP
DKYQITAVSFSDATDKIFTGGIDNDIKVWDLRKGEVSMTLQGHQDMITGMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYI
WDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEV
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggaagttattccagcatggggtgagaatgctttgtctatggctggcccaagaccaatg
gaatggtctactgtcccgtatagtggtccgcaagcacctgggccaaatgggaaacagcgg
acttcaagtttggaatcgccaatcatgttgctgatgggtcaccagagcgccatctacact
atgaagttcaatccagcgggaacagtggttgcatctggatctcatgacagagagatcttt
ttgtggaacgtacatggggattgcaagaacttcatggttttaaaaggacacaagaacgca
gttttggatcttcactggactagtgatggatcccagatgatatctgccagtcctgacaaa
accctgagggcatgggatgttgaaacagggaaacagataaagaaaatggcagagcactca
tcatttgtgaattcatgttgcccttctcgaaggggaccgccacttgttgttagtggatcc
gatgatggaactgccaaactgtgggacatgcggcagaggggtgcaatccaaacatttcca
gataaatatcaaatcacagctgtcagtttctcagatgcaacggacaagatcttcacaggt
gggattgacaatgatataaaggtatgggacttgcgcaagggtgaagtgtcaatgactctt
caagggcatcaagatatgataacaggtatgcagctgagtcccgatgggtcctatcttctt
acaaatggtatggactgcaagctctgcatatgggatatgcgtccgtacgcaccacaaaat
cgatgtgtgaaggtattggaagggcaccaacacaacttcgaaaagaacttgttgaaatgt
agttggtctcctgatggaagcaaagtcacggcagggagttcagatcggatggtttacata
tgggatacaacttctcgacgcatcttgtataagctccccggccatactggatcagttaat
gagtgcgtcttccatcccagtgaacctattgttggatcttgcagtagcgataaacagatt
tatctgggggaggtttag
DBGET
integrated database retrieval system
