Coccidioides immitis: CIMG_09216
Help
Entry
CIMG_09216 CDS
T01114
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cim
Coccidioides immitis
Pathway
cim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CIMG_09216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cim03400
]
CIMG_09216
Enzymes [BR:
cim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CIMG_09216
DNA repair and recombination proteins [BR:
cim03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CIMG_09216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
BRCT
DNA_ligase_A_C
LIG3_BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
4558489
NCBI-ProteinID:
XP_001239595
UniProt:
Q1DKE7
LinkDB
All DBs
AA seq
985 aa
AA seq
DB search
MDRLNNVGGETERELDEKYPNRPRNKHSTLPFHDLFLTLFNPLNGNKKRPTGPAAARKKL
GPHGGQQTLSPQELRRDIIQRFISRWRKEVGNDIYPAFRLIIPEKDRDRAMYGLKEKTIG
KLLVKIMKIDKNSEDGFNLLNWKLPGQSMASRMAGDFAGRCYEVISKRPIRTDVGNMTIQ
EVNDKLDVLAATSKEDEQIPVLEEFYRNMNPEELMWLIRIILRQMKVGATERTFFEIWHP
DAESLFSISSSLRRVCWELYDPNVRLEADEARVTLMQCFQPQLAQFQMHSFPKMIERMRL
SPDDPTFWIEEKLDGERIQLHMMSDDSIPGGKRFGFWSRKAKDYTYLYGNGFYDENGALT
RHLKDAFADGVDNIILDGEMITWDPEQDAPLPFGTLKTAALSEQRNPFSATGQRPLFRIF
DILYLNDKALTRYTLRDRRRALEASIKPVHRRLEVHTYEIGNSAADIEPQLRKVVAEASE
GLVLKNPNSPYRLNDRHDDWMKVKPEYMTEFGESLDCVVIGGYYGSGKRGGGLASFLCGL
RVDEAQVRQGASPMKCYSFLKVGGGFTAPDYANIRHHTDGKWKDWNPKKPPTEFIELAGG
DAQYERPDVWIRPDESVVLCVKAASVTPSDQFRLGLTVRFPRFKRLRMDKDWKSALSIQE
FMDLKANAEREQKEKEFKIDNSRRKRAKRAVKKPLTIAGYDESKRAGFTGPSGHVFEGMN
FFVITDSVEPEKKSKLELEQLIKANGGKIYQTHTAAPNTLCIAERRTVKVASVQKVAKES
IIRPSWLFDCIKQNEVDKGLPDLLIPFEPRHMYFTVKSQEEEIARHVDEYSDSYARDITP
NELSKLLVSMPLIPNLPPPHISKTETQIQERESTFQELRGWLFKNQVLHFVKRRSDSMLS
LPLRLASNLARFAGASVANELEDKSITHVVIDTDSQPADVSALRSAISKRVAAGRRIPHL
VTIAWIQDSWKAESLLDEERFAPTA
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggaccgattgaacaacgttgggggagagactgagagggagctcgatgagaaatatccc
aaccgtccccgcaataaacactcgacattacctttccatgaccttttccttacgcttttc
aatcctctaaatggaaacaagaagagaccaacaggacctgccgccgctcgcaagaagttg
ggaccacatggaggacaacagaccctttccccgcaggaattacggcgagatattattcaa
cgtttcatttcacgatggagaaaggaagtagggaacgatatctatcctgcgtttcgattg
atcatacctgagaaagatcgagatcgtgcgatgtatggcttgaaagagaagacaattgga
aaactgctggttaaaattatgaaaattgataaaaactccgaagatggatttaaccttttg
aactggaagcttccaggccaaagcatggcgagtcgaatggctggcgattttgctggtcgc
tgctacgaagtgatatcaaagcgacctataagaacggatgttggcaacatgaccatccag
gaggtcaatgacaaactggatgttctagctgctaccagtaaggaagatgagcagatacct
gttcttgaagagttctacagaaacatgaaccctgaagaactgatgtggctcataagaatc
attttgcgtcaaatgaaagttggagccactgagcggacgttcttcgagatatggcatcca
gatgcagagagcctgtttagcatatccagcagccttcgccgagtttgttgggaattatat
gacccgaatgtccgcctggaggccgatgaagcacgggtgacgctcatgcaatgctttcaa
cctcaattggcgcagtttcaaatgcattcatttccaaagatgatcgagaggatgcggctc
tcccccgacgatccaacgttctggatcgaagagaagctagatggtgagcgaatccagctt
catatgatgtccgacgactccattcctggaggtaaaagatttggattctggtcacgtaaa
gcaaaggattatacatatttgtatgggaacggattctacgatgagaatggagcattgacg
cgacatcttaaagatgcttttgcagatggtgttgataacattattctcgatggagaaatg
attacctgggacccagaacaagacgcaccattgccctttggcacgctcaaaacagcagct
ttatcagagcagaggaacccattctcggctactggccaaaggcccttatttcggattttc
gatatcttgtacctcaatgataaagccttaaccagatacacattacgggatagaagacga
gcccttgaagccagtatcaaaccagtccatcgtcgtttggaagttcatacctacgaaatc
ggtaattctgctgcagatattgagcctcagctccggaaggtggtggcagaggcatctgaa
gggcttgttcttaagaatccaaattcaccttatcgtctgaatgaccgccacgacgattgg
atgaaagtgaaacctgaatatatgacggagtttggtgaatcccttgattgcgttgtgatc
ggtggatactatggctcaggtaaacggggcggtggattagcaagttttctgtgtggactg
agggttgacgaagcccaagttcgacagggggctagcccgatgaaatgctactcatttctt
aaagttggaggaggattcacggctccagactatgcgaatattcgccaccataccgacggc
aaatggaaagattggaatcccaagaagccgccaactgagtttattgaattggctggtggt
gatgcacagtacgaacgccctgacgtatggattcgacccgatgagtctgttgttctgtgt
gtcaaagcagcctctgtgactcctagtgaccagtttcgattggggttgacagttcgcttt
ccgcgattcaagcggttacgaatggataaggattggaaaagcgccctgtccattcaagaa
ttcatggacttaaaggcgaatgcagaaagagagcagaaagaaaaggaattcaagatcgat
aactcccgaagaaaacgggcgaagagggctgtcaagaaaccgcttacaattgctggatac
gatgaaagcaaaagggccggttttacaggtccatcagggcatgtttttgaaggaatgaat
tttttcgttattacggattcagttgagccggagaagaagtccaaacttgagctggaacaa
ttgatcaaagcaaatggcgggaaaatatatcaaacccatacggcagcaccgaatactctt
tgtattgcagagagaagaactgttaaggttgcatctgtgcaaaaagtagcaaaagaaagt
atcattcgtccgtcttggctgtttgactgcattaagcagaatgaagtcgacaaagggcta
ccggatttgttgatccccttcgaaccgagacatatgtattttacggtgaaaagccaagaa
gaagagatagcccgacatgtggacgaatattcagatagctacgcgcgagatattacccca
aatgagctaagcaagcttcttgtttcgatgcccctaatccctaatctcccaccaccccac
atttcaaaaacggaaacccagatacaagaacgagaaagcaccttccaggagctgcgaggc
tggctattcaaaaatcaagtgctacattttgtcaaacgtcgatcggattccatgctgtcg
ctccctctacgtcttgcgtctaatcttgctcgattcgcgggtgcttcggtggcaaatgaa
ctggaggacaaaagcatcacccatgtcgtcattgacacggacagtcaaccggctgatgtt
tctgctttgcgctctgcgatatcgaagcgtgtagctgctgggagaagaattccgcatctt
gtgactattgcctggatccaagacagctggaaggcagaatcattgctagatgaagagcgg
ttcgctccgaccgcctag
DBGET
integrated database retrieval system
