Ciona intestinalis (yellow sea squirt): 100170070 Help Entry 100170070         CDS       T01056                                  Symbol zf(parp)-2 Name (RefSeq) DNA ligase 3   KO K10776   DNA ligase 3 [EC:6.5.1.1] Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03410   Base excision repair Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09124 Replication and repair    03410 Base excision repair     100170070 (zf(parp)-2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cin03400]     100170070 (zf(parp)-2) Enzymes [BR:cin01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      100170070 (zf(parp)-2) DNA repair and recombination proteins [BR:cin03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Short Patch-BER factors      100170070 (zf(parp)-2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C RNA_ligase BRCT_2 mRNA_cap_enzyme Cytomega_gL Motif Other DBs NCBI-GeneID:  100170070 NCBI-ProteinID:  XP_002129234 Ensembl:  ENSCING00000002580 LinkDB All DBs Position Unknown AA seq 854 aa AA seqDB search MSDSTRFTCDYGKRKSNCKKCKKPIEKGSPRIAKCVPNYFNDGDGEMKQYHHIPCMFETF VKARATTKKIEDVSDLDGFADMKDEEKDEIKKLVATLCANQAAKKTPKKATPKKRKSSDP VPSPAAKVSTPQKKIKTDNSPSTSCAPAPRVGGNSKDNQFREFRRLCGMIAEEASYNEKT NIAKRFFEKGSSGDGFTGDLFTIVKLLMPGAVKRTYNLQSKQLVKLFSRIFVEDVDDMME DLEQGDVSETVYKFFESNTSCPPTKKSTLTIHDVDDFLENLSKLTREEDQLELLKKLAKR STGNDLRTVIRLIKCDLKITAGPKHILDALDSNAHEAFKASRDLKDVLDRIEENKKSGSK KLEVRASLMTPVSPMLAEACKSVEQAMKKCPNGMYSEIKYDGERVQLHMKGKDFQFYSRS LKPVSDHKIMHFEKYIPDAFPDGHSMILDSEVLLVDVKTGNPLPFGTLGIHKKSKFQDAN VCLFIFDILQFNGENLMGKSMKERRTILETSMKVIPNRVMLSELKFVNKPDDLKHMIVRV IKEGLEGLVLKDIKGVYEPGKRHWLKVKKDYLMQGQMADTADLVVLGAYYGTGSKGGMMS VFLMGVYDEKRERWCTVTKVGNGHDDETLEKINKQLKVEKISKDMKRVPKWLNLNKNHVP DLVVADPKNAPVWEITGTEFTQSESHTAEGISIRFPRVTKIRRDKNWKTATSLERLKALY LKSKEESDISHLLGVSSTPVVKDEKSTSKSTQKVSVFQQVKENNEEKLLKMAESEFLNDI FLGVKIFIPTDVEKRKKMERHILAFNGDVLGNDQFKEATHIVQCDSVKVADIPISASLVT ASHVWECIKNKVSL NT seq 2565 nt NT seq  +upstreamnt  +downstreamnt atgtcagattctactagattcacttgcgactatggtaaaagaaaatcaaattgcaaaaag tgcaagaaaccaatagaaaaaggcagcccaaggattgcaaagtgtgttcctaattacttc aatgatggagatggtgaaatgaagcaatatcatcatattccatgtatgtttgaaaccttt gttaaggcaagggcaaccacaaagaaaatagaggatgtaagtgacttagatggattcgct gacatgaaggatgaagaaaaggatgaaattaaaaagcttgttgctactttatgtgccaat caagcggctaagaagactcctaaaaaagctacacccaaaaaacgtaaatcatctgatcct gtaccttctccagcagccaaagtctccacgcctcagaagaagataaaaactgataattcc ccatccacatcttgtgctcctgctcctcgagtgggagggaactcaaaagataatcagttc agagagtttcgacgtttgtgtgggatgatcgcagaagaagcgagctataatgaaaaaacc aacatcgcgaaaaggtttttcgaaaaaggctcaagtggcgatgggttcactggggacttg ttcacaatagttaaacttctcatgccaggagctgtcaaaagaacatataacttacaaagc aaacaacttgttaagttgttcagtagaatcttcgttgaagatgttgatgacatgatggaa gacttggagcaaggagatgtttcagaaacagtttataagttctttgaatcgaacacatca tgtcctccgaccaagaagagcacgctgaccatccatgatgtagatgactttcttgaaaac ttgtctaaactcacaagggaggaggaccagcttgaacttttaaaaaaactggcaaaacgc agcaccggaaatgacctcagaacagtaataaggctaattaaatgtgatcttaaaataaca gcagggccaaagcatatcctggatgctctggacagcaacgcacacgaggctttcaaggca tcaagggatttaaaagatgtactagatcggattgaagagaataagaaatcagggagtaaa aagttggaggttcgtgcctctctcatgacaccagtgtcccccatgctagctgaagcatgc aagtcagttgaacaagctatgaagaaatgtccgaatgggatgtactctgaaattaagtat gatggcgaaagggtacaactgcatatgaaaggaaaagatttccagttttacagcagaagt ttaaaacctgtatccgaccacaaaatcatgcattttgaaaaatatatcccggatgctttt cctgatggccacagcatgattctggacagtgaagtcttgctggtcgatgttaaaactgga aatcctcttccatttggaacccttggtattcataagaagtctaaatttcaagacgctaat gtttgcttgtttatatttgacattcttcagttcaatggagagaacttgatgggaaagtca atgaaagaaagaagaacaatccttgaaaccagcatgaaagtgatcccaaaccgagttatg ctttcggagttgaagtttgtgaataaaccagatgacctgaagcatatgattgtgagggtt ataaaggagggtttggagggtctggtgttgaaggatattaaaggggtttatgaaccagga aagcgacattggcttaaagtgaagaaggactatctaatgcagggacagatggcggatacc gctgatttagtagtactgggtgcttactatgggactggcagcaaaggtggaatgatgtct gtgttcctgatgggggtttatgatgaaaagcgagaacgctggtgtacggttactaaagtc gggaatggacatgatgatgagacattggagaagataaacaaacaactgaaagttgagaaa ataagcaaagatatgaagagagtaccaaagtggttgaatttgaataaaaatcatgtccca gatttggttgtagctgacccaaagaatgcaccagtgtgggaaatcacgggtactgagttc acacaatcagagtctcatactgcagagggaatttctataagatttcccagagttaccaag attagaagggataagaactggaaaacagcaacttcattggaacgtttaaaggcattgtat ttgaaatcaaaagaagagtcagatatttcacatttacttggagtaagcagcaccccagtt gttaaagatgagaagtccacatcaaaatctacacaaaaggtgtcagtttttcaacaggtg aaggaaaacaatgaagagaagttgctaaaaatggccgaatcagaattcttaaatgatatt tttcttggggtaaaaatcttcattccaacagacgtggaaaaaagaaagaaaatggagaga catatcctggcatttaatggggatgtgttgggtaatgaccagtttaaagaagccacacac attgtgcaatgtgactctgttaaagtagcagatataccgatcagtgcaagtcttgttact gcatcgcatgtgtgggaatgtattaaaaataaagtttcattataa

DBGET integrated database retrieval system