Ciona intestinalis (yellow sea squirt): 100175834
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Entry
100175834 CDS
T01056
Name
(RefSeq) AT-rich interactive domain-containing protein 1A-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100175834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
100175834
03021 Transcription machinery [BR:
cin03021
]
100175834
03036 Chromosome and associated proteins [BR:
cin03036
]
100175834
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
ARID
100175834
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100175834
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100175834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
Motif
Other DBs
NCBI-GeneID:
100175834
NCBI-ProteinID:
XP_018669930
LinkDB
All DBs
Position
12:5133155..5140385
Genome browser
AA seq
994 aa
AA seq
DB search
MGQPPSARPTYPNQQGYPGHPYTPPNQYLGMKRPATDQYGPPSKYIRPESHLSHYPTPGN
YPQNHPAYDRTRPRYPSSGPSTPHGSHPMYRGPLRRDRGSQPSGGFPKHDGARWPHPGVT
QQAQSPVQFQHIHKYSMEQRKRQVYRSSMLRSDNLFPPDSVEATQPKNFRFQRKSCRDVG
VLEGWKVIMALKSGLLVESTWALNVLTVLLYDQQTIAQFKLVQLPGLLDALVEHYRRCLS
AIFTLSSEQQALGVANFDPTPHPEVKDALEDETADVPTKMKTNKGKKKKGQANAKLYGVF
SELPIKVEPRTDPFVVDRTHQWDFANKIDLSDDLSHIIVSFQQSTEATQVEHDEITEPEQ
PIRVVEATLEDVLSIPCSVLAPEDDDVIDDVTTHDVMTDNIIKDIKKEVAEKSEDIPETK
TNNEKIVANGTDENEKMDVCDVIKKTDDLITNPDVTKNDDLTKKCDDVTIKTKDVIMKTD
DITNHTADITNTTDDIIKKTDDIIKKVPDVINKLNDVTNEQSDVIMAEVITKESEKLIKE
EKVEVVLKEKPVLCNGLQTNLILNQAEVKVEQVTTDSNKLNDSPRLSLTSRVEKVLEERN
VILLEDEAAGSDGSQVDLLLGPVIHQDVCKRQAEVSRRLECLSNIIRGLSFVPGNANELC
RQRELMRALSGTLLLRHKHRTRPRHASPHSESCDENDEKSDNRSYYLNSVGLSGKKSKKS
DLFAPEDKTEGPRQRRLFSATVLDSDENTEVYTAPWWWDTVRRVREDSLVILSNIAHSVD
LSELPDDHVAMAVLEACLHWSVCPSSDASDSFSSSRSRRMLSPQRLALEILTKLSIKDQN
VDLILATRPFSRIEKLFGYLVNLICDRKDQTLREFAIVLIANLAGGDTVAARAIALQKGA
ISGLISFLEECEETGMSNRRMFSAVQQNINCGTIEFMMIKCSTTILCLAKLDENRSSFVK
YQLRLLSLSMSQILDPKVVRIMSSVLYELSHDSS
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaccaccgagtgcgagaccaacttaccccaaccagcagggctaccctggccac
ccctacaccccacccaaccaataccttggtatgaaacgtccagctactgaccagtatggt
cccccaagcaaatatatcagacctgaaagccacctttcccattaccccaccccagggaat
taccctcaaaaccaccctgcttacgaccgtacccgccctcgttatccctcaagtgggcct
tcgaccccacatgggtctcaccccatgtacagaggaccactaaggcgtgacagggggtct
cagccatcaggaggctttcccaaacacgatggagcaagatggccccaccctggagtcacc
cagcaagcacaaagtcccgtacagtttcagcatattcataaatattcaatggaacaaagg
aaaagacaagtgtacagatcctccatgttaagatcagacaacttgttcccccctgactca
gtggaagccacccaacctaagaacttcaggttccagaggaaatcctgcagagatgttggt
gtactagaaggttggaaagtgatcatggcattgaagagtggtctgctagttgaaagtaca
tgggcacttaatgtgttaacagtattgttatacgatcaacaaactatagctcagtttaag
ttggttcaactacctgggttgctcgatgctttagtggaacattatagacggtgtttgtcg
gccatctttactttatcaagcgagcaacaagcgttaggggtcgcgaactttgaccccacc
cctcaccctgaggtaaaagatgcattggaagatgaaacagcagatgttccaactaagatg
aagaccaataaagggaagaagaagaaaggccaagcaaacgcgaaactttacggggttttc
tccgaactcccgatcaaagttgaacctcgaaccgaccccttcgtggttgatcgaacgcac
caatgggatttcgcaaacaagattgacttatctgatgacttgtcgcacatcatcgtaagt
tttcaacaatcaacggaagccactcaagtggaacatgacgagatcactgagccggaacaa
ccgatccgggtcgtggaagcgacactcgaggatgttctttccatcccttgctccgtgctt
gctcctgaggatgatgatgtcatcgatgatgtcactacccatgatgtcatgactgataat
atcatcaaagatatcaaaaaggaggttgcagaaaaatctgaagacattccggaaactaaa
acaaacaatgaaaaaattgttgcaaatggaacagatgaaaatgagaaaatggatgtttgt
gatgtcataaagaaaactgatgatctcataactaatcctgatgtcacaaagaatgatgac
ctaacaaagaaatgtgatgatgtcacaataaaaactaaggatgtcataatgaaaacggat
gacatcacaaatcacactgctgacatcacaaatactactgatgacatcataaagaaaact
gatgatatcataaagaaagttcctgatgtcataaacaagttgaatgatgtcaccaacgaa
caaagtgatgtcataatggcagaagtaataacaaaagaatcagaaaagttaataaaagaa
gaaaaagttgaagttgttttgaaagaaaagcccgttttatgcaatgggttgcaaaccaac
ctaattttgaaccaagctgaggtaaaagttgaacaagttacaacggattcgaataaattg
aacgattctccgaggttgagtttgacttcgagggtggagaaagtcctggaggaaaggaat
gtcatcttgcttgaagatgaagcagcagggagcgatgggagtcaagttgatctgctcctt
ggtcctgtgattcatcaagatgtttgcaagaggcaagcggaggtttcacggaggttggaa
tgcttgtccaacatcatccgtggattgtcgtttgttccagggaacgcaaacgaactttgt
cgacagcgtgaactcatgagggcgctgtctggcacattattgttgcgtcataaacacagg
acgagacccagacacgcatcaccgcacagcgaaagttgcgacgaaaatgatgagaaatcg
gacaatcgctcgtattatttaaactcggtcggtttatccgggaagaagagtaaaaagtca
gatctttttgctccggaagacaaaactgagggtccgcgacagcgtagactctttagcgcc
accgtgctcgattctgatgaaaacacggaggtgtatactgccccctggtggtgggatacg
gttcgaagggttagggaagactcacttgtcatcttatcaaacattgcgcactcggtggac
ctctcggagcttcctgacgaccatgttgctatggcggtgttggaggcgtgccttcattgg
tccgtttgtccgtcgtccgatgcttcagattccttttcatcgtcaaggtcgaggcgcatg
ttatccccacaaaggttggcgttggagatcctcacaaaactcagcatcaaggatcagaat
gttgaccttatacttgctacacgaccttttagtcggatagaaaagttgtttggatacttg
gtaaacttaatatgcgatcgtaaagaccaaacccttcgtgagtttgcaatcgtcttaata
gcaaacctggcagggggtgatacagtggcagctcgtgctatagctttacagaaaggagca
atatccggccttatttcatttcttgaggaatgcgaagagactggaatgtcaaatcgaaga
atgttttccgccgtccaacaaaatattaactgtggcacaatagagtttatgatgatcaag
tgttcgacaactattctgtgtttggctaaactggatgagaacagatcatcgtttgtgaag
tatcaactacgattgttatcattatcgatgtcacaaatactcgaccccaaggttgttcgg
ataatgtcctctgttttatacgaactcagtcatgatagctcgtga
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