Ciona intestinalis (yellow sea squirt): 100176197
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Entry
100176197 CDS
T01056
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100176197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100176197
Enzymes [BR:
cin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100176197
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100176197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
START
DNA_ligase_A_C
RNA_ligase
Tsc35
mRNA_cap_enzyme
LED_rpt
Motif
Other DBs
NCBI-GeneID:
100176197
NCBI-ProteinID:
XP_026689651
Ensembl:
ENSCING00000009536
LinkDB
All DBs
Position
3:2280085..2288860
Genome browser
AA seq
1041 aa
AA seq
DB search
MEFNIEKQSTSTQVGKDNEGKSVASKIPFHQLCILFDKIYKAKSNAVRRQELKLFISKWR
ELQTKFHQPGKIDTLYPAIRLILPQLDKERVSYGLKEVLLARLYVDVMGLSRTGKDAKKL
LEFRNPKVNSSNAGDFAETAYKQLLSKRCIDKGSLKISEINLYLDKIAVQSSEKKKEMVR
KTFLELIQKTSGVEQKWMIRIILKDMKLRMGQKVILEEIHPDAEEVFNVTSSLKQVCERL
NDPDVRLADTEIQLFQPFRPMLALNANITEVEKLLGNQPFKIEIKYDGERSQLHKEGNRY
KYFSRSGREYSTVFGETPYTGTLTPFIYGCFHESVSSCILDGEMMGFDPQLNIFMQKGGK
FDIKHITEDSELQPCFVVFDILLLNQERLTSKPQSERFKLFNKLIQPLEGRMHLTEAKEA
SSNQEVMSSLNDAIDRREEGIIVKNPNAKYFPNKRKGSGWFKIKPEYVGGVVDDLDLVII
GATFGTGRHGNMLSMFHLGVGVRDSEDSSDPPRVFKSLCRIGSGYTDKQLLQLVDKLKNK
LKVFDKKKHPDWLKVTKEKPDVYIHPCDSLVVQVRATEIISSSSYAAHCTLRFPRLIAIR
EDKTYLDALDTSQLDNLRSIADDKKKVKKRIFISSPSMSSLPPLDETRDLQEKMDELKTL
QNILDRQVSKLQGYFDILMGIEDGEYTKPKNKTDDLNNNSSSTEDLYKLTDKLKTLLLNG
ADLKGDAITFRATSNGVLSTISQCLQLVNNRELLWQTRLKTIHEKKFSTDHQRIESESSV
ESGDEEDDIFFDPEGEVVEQKVTHEHSEALNQRIKEHLALLDHSDPDANGWEQITEDGEM
KVYRKELVQDGLICDPLKAVHSVGLVTAKEMCHYFWFPDVRRDWEETVDVFDVLETLDEA
TTINYQTHKQVWPAAQRDCLYLSSMVKVDNPPSVGDKIPHDTWIVCNFSVDHPEANPVSG
CVRALIEVALICQTFITLPKDGGPITRDCLQCDIIYVANVNPGGWAPASVLRSIYKREYP
KFLNRFTNYVQQKTKDLKLLF
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaacatagagaagcaatccacttccacccaggttggaaaggataatgaagga
aaaagtgttgcttcgaagataccttttcatcaattatgcatactgtttgataaaatatac
aaggctaaaagtaatgcagtaagaagacaagaactaaagttgtttatatcaaaatggagg
gaattacaaactaaatttcaccagcctggaaaaattgatacattatatccagctataaga
ctaattttgccccagttagataaagagcgagtttcatatggacttaaggaagttttgttg
gcacgactttatgttgatgtgatgggtttgtcaagaacaggcaaagatgccaagaagttg
ttggagtttcgcaatccaaaagtgaactcttcaaatgcaggtgactttgctgaaacagca
tacaaacagttgctatccaagaggtgcattgataaaggtagtttaaaaatttctgaaatc
aacttgtatttggataaaatcgctgttcaaagttcagaaaagaaaaaagaaatggttcga
aaaacttttctggaattgattcaaaagacatctggtgtagagcaaaaatggatgattcgg
atcatattgaaagacatgaaacttcggatgggacagaaagttattcttgaggaaatccat
cctgatgctgaagaggtgtttaatgtaacttcctcactaaaacaggtgtgtgagcgactc
aatgatccagatgttagacttgctgacactgaaattcaattatttcaaccatttcgtccc
atgcttgcccttaatgcaaatattacggaggttgagaaacttcttggcaatcaaccattt
aaaatcgaaatcaaatacgatggtgaacgaagtcagttgcataaagagggaaatagatat
aaatatttttctcgtagtggacgagaatactcgaccgtgtttggggagacgccatacact
ggaacactaactccattcatttacggttgtttccatgagtctgtatcctcgtgtatattg
gacggtgaaatgatggggtttgaccctcaacttaatatatttatgcagaaaggaggaaaa
tttgacataaaacacataacagaagattctgaacttcaaccttgttttgttgtgtttgat
attttgttactgaatcaagaacgactgaccagcaaaccacaaagtgaaaggttcaagttg
ttcaataaactcatccaacctttagaaggtcgaatgcatttaactgaagctaaggaagct
tcaagcaatcaagaggtaatgtcaagtttgaacgatgctattgatagaagagaggaaggg
atcattgttaagaatcccaatgcaaaatattttccaaacaaaaggaaaggcagtggttgg
tttaagatcaaacccgagtatgttggtggtgtggtggatgatctggaccttgttattatt
ggagcaacttttggaacaggtcgtcatggcaacatgttgtcaatgtttcatcttggagtt
ggtgttcgtgattcagaagattcttctgaccctcctcgtgtttttaaaagtctgtgcagg
attggatcaggatacacagacaaacagctcttacagctggttgataaactgaaaaataag
ttgaaagtttttgataaaaagaagcatcctgactggttgaaagtaacaaaagaaaaacca
gatgtttatattcatccttgcgattcactggttgttcaggttagagcaacggaaatcata
tcatcatcttcttatgctgctcattgtacacttcgatttcctcgtttaattgcaatacgc
gaggacaaaacttacctagatgctcttgatacttcacaactggataatctgagaagcata
gcagatgacaagaaaaaagttaagaaacgaattttcattagtagtccttccatgtcttca
ctgccgcctttggacgagacaagagatttgcaagagaagatggatgaactgaaaacgctg
caaaacattcttgatcggcaagtatcaaaactgcaaggctattttgatatccttatgggc
attgaagatggagaatatacaaagcctaaaaacaaaacagatgatttaaataacaatagt
tcttccactgaggatttgtataaattgactgacaagcttaaaacattgcttttaaatgga
gcagatttgaaaggtgatgcaatcacctttagagcaacatcaaacggtgttctaagcaca
atttctcaatgccttcagttggtgaacaatcgtgaattactatggcaaacaagattgaaa
acaattcatgaaaagaaatttagcaccgatcatcagagaattgaaagtgagtcgagtgtt
gaaagtggggacgaggaagatgatattttctttgatcctgagggtgaagtagtggagcaa
aaagttactcatgaacattctgaagctctgaatcaaaggattaaggagcatttagctctt
ttagatcactcggatcctgatgcaaatggatgggagcagatcacggaggatggagaaatg
aaggtttacaggaaggagttggtgcaagatggtttaatttgtgatccattgaaagcagtt
catagtgttggtctggtaactgccaaggagatgtgccattacttttggtttcctgatgtt
cgaagagattgggaagaaactgtggatgtttttgatgttttagaaacccttgatgaagca
acaaccatcaactatcaaacacataagcaagtatggcctgctgctcaacgtgattgtttg
tatctttcttccatggtgaaggtggataatcctcccagtgtaggagacaaaataccccat
gacacatggattgtttgtaacttctctgttgatcatcctgaagcaaatcccgtctctgga
tgtgtaagagcacttatagaagttgctttgatttgccagacttttataaccctacctaaa
gatggtggaccaatcacaagggactgtctccagtgtgatattatttatgttgcaaatgtc
aacccaggtggatgggcacctgcttctgtgttacgctcaatttacaaacgggaatatcca
aagtttttaaatcgctttacaaattacgtccagcagaaaaccaaagatctaaaacttttg
ttttaa
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