Ciona intestinalis (yellow sea squirt): 100177272
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Entry
100177272 CDS
T01056
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03020
RNA polymerase
cin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100177272
09124 Replication and repair
03420 Nucleotide excision repair
100177272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100177272
03400 DNA repair and recombination proteins [BR:
cin03400
]
100177272
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100177272
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100177272
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100177272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
100177272
NCBI-ProteinID:
XP_026691051
Ensembl:
ENSCING00000007884
LinkDB
All DBs
Position
7:2329857..2346730
Genome browser
AA seq
1826 aa
AA seq
DB search
MALTESSVDLKLVKRVQFGILSPDEIKRMSVTEGGVQYPEVSEGGRPKLLGLMDPRQGVV
DRMSRCQTCAGNMTDCPGHFGHIELAKPVFHTGFLTKTIKVLRCVCFYCSRLLVEKGNPK
IRQIMAKSKGQPRKRLAHVYELCKGKNICEGGEEMDNTFDVQQRDEDEPRKVGHGGCGRY
QPKIRREGMELIAEWKHVNEDSQEKKIVVSAERVHEIFKRISDEESEILGMDPRFARPEW
MINTVIPVPPLCVRPSVVMGGGSARSQDDLTHKLADIIKANQQLKRNEQNGTASHIILED
VKLLQYHVATLSDNDMPGVPKALQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSARTV
ITPDPNLKIDEVGVPRSIACNMTYPEIVTPFNIERMQELVRRGNNQYPGAKYIIRDSGDR
IDLRYHPKPSDLHLQVGYKVERHIKDGDVIVFNRQPTLHKMSMMGHKVKVLPWSTFRMNL
SVTTPYNADFDGDEMNLHVPQTMETRAEILQLAMVNRMIITPQSNRPVMGIVQDTLTAVR
KMTKRDSFIEKPDFMNLLMYLGDWDGYIPQPAILKPKPLWTGKQLFSLIIPPGINCIRNH
STHPDGEDSGPYKHISPGDTRVLVENGILLSGIICKKSLGTSSGSLCHVVALEKNADVCR
EFYSNIQTCVNNWLMIEGHSIGIGDTIADAQTYQDIQTQIRKAKQEVIEVIEKAHKEDLQ
PTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSDFNNFKAMVVAGSKGSKINISQVIA
VVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPEARGFVENSYLAGLTPTEFYFHAMGGREG
LIDTAVKTAETGYIQRRLVKAMEAVMVRYDGTIRQCNDFMIQLCYGEDGLAGEKVEFQNL
ATLKPSHATFNKKFRFDYSKERFMRRCMNEDVVRMIQTDVTIQQELETEFDQLQQDRENI
RAIFPTGDSKVVLPVNLSRLIWNAQKIFHIDLRSPSNLNPQRVIEGVRDLSKKLVIVCGE
DRLSKEAQSNATLLFNVHLRSTLCSRRVADEFRLSAEAFEWILGEIETKFQQAQVHPGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINVSKKPRTPSLTIYLIGP
ATRDAQRCKDVLCRLEHATLRKVTANTAIYYDPDPMNTVIQEDQEFVNVYYEMPDFDVTR
ISSWLLRIELDRKRMTDKKLSMEQIAEKISAGFGDDLNCIFNDDNAEKLVLRIRIMNSEE
QKADEDTEEQTDKMEDDVFLRYIEANMLTDMTLQGIPQIAKVYMHLPKEENKKRIVITKE
GEFNAVQDWILETDGTALMRILSERDIDPVRTTSNDICEIFSVLGIEAVRKALEREINHV
ISFDGSYVNYRHLALLCEVMTSKGHLMAITRHGINRQETGALMRCSFEETVDILMEAASS
AETDHMDGVSENIMLGQLVPGGTGCFGLLLDAEKCKYAMEIPTNIGVVGGTGMFFGSMAS
PSSMSPAMTPWNSGATPGFSGSFTPGGFGSGMTPSAASFSPAPTESSGFSPGFSPSWSPA
QXPGPSSPASPYIPSPKHSAMSXSYSPASPSYSPTSPSYSPASPSYSPSNPKYSPASPSY
SPASPEYSPSSPKYTPSSPSYSPASPSYSPSSPNYSPSSPKYSPSSPSYSPASPSYSPTS
PSYSPSSPGYSPSSPSYSPSSPGASSPAYSGQAGYSPSSPSYSPTSPSYCPASPRYTPTS
PTYTPGGDLSPASPSYSPTSPGAESPASPSYSPTSPSYSPASPMYSPTSPGYSPLSPGYS
PASPSYTPSTPGGGQHHGQAKDSDED
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atggcactcacagagtcgagcgtcgatttaaaacttgtaaaaagagtccagtttggtatt
ctcagcccagatgaaatcaaacgcatgtcagtcactgaaggtggggtccaataccctgaa
gtgtcagaagggggaagaccaaagctgttggggttgatggacccacgtcagggggttgtt
gatagaatgtcaaggtgccaaacatgcgctggcaacatgactgactgtcctggacacttt
ggtcacatagaacttgccaaacctgtattccacactggctttctaacgaaaacaataaaa
gttcttcgttgtgtttgtttctactgttcgcgcttgcttgttgaaaagggaaatccaaaa
attcgtcaaatcatggctaaatcaaagggtcaaccccgtaagaggttagctcatgtctac
gaactttgtaaagggaagaatatttgtgaaggaggtgaggagatggataatacatttgat
gttcagcaacgtgatgaagatgaaccaagaaaagtgggccatggtggttgtggacgatac
cagccaaagattagacgagaaggaatggaattaattgctgagtggaaacatgtgaatgaa
gactcacaagagaaaaagatagttgtttctgcggaacgtgtgcatgagatatttaagaga
atatctgatgaagaatctgagatcctcgggatggatcctcgtttcgcgcgacctgaatgg
atgataaacactgtgatccccgttcctcccctttgtgttcgaccatcagttgttatgggg
ggagggagtgcaaggagtcaggatgatttaactcacaaactggccgacattattaaagca
aaccaacaattgaaacgcaacgaacaaaatggaactgcctcccatattatactggaagat
gtgaaactactgcagtatcacgtggctacgctatctgacaacgatatgcctggagtgcct
aaggctttacaaaaatcgggccgtcctttaaaatcaattaaacaacgattaaaagcaaag
gaaggacgaattcgtggcaacttgatggggaagcgtgttgacttttctgcacgtactgtc
atcacacctgatcctaatttaaaaattgatgaggttggtgttccacgatccatagcttgc
aacatgacgtacccggagattgtgactcctttcaacatagagaggatgcaagaactggtt
cgtcgtggcaacaaccagtatccgggagcaaaatacatcatccgtgacagcggggatcga
attgatcttcgatatcatccgaaaccttctgatcttcatctgcaagttggatacaaggtt
gaacgtcatataaaagatggtgatgtcatagtgtttaaccgacaacctactttgcataaa
atgtcaatgatgggacacaaagttaaagtccttccctggtcaaccttcagaatgaattta
tctgtgaccaccccatataacgctgacttcgatggtgatgaaatgaacctccatgttccg
caaaccatggaaacgagagccgagatcctccagttggcgatggtgaacaggatgatcatc
actcctcaaagcaatcgacccgtcatgggaatcgtgcaagatacgctgactgctgttcgt
aaaatgaccaaacgagattcatttattgaaaagcccgacttcatgaacttactaatgtac
cttggtgactgggatgggtacatcccccaacctgcaatcctcaaaccaaaacctctatgg
acggggaaacaactcttctcgctcattattcctcctgggattaattgcatccggaaccac
agcactcatcctgatggtgaggactccggaccttacaaacacatatcgccgggagataca
agggttctagtagagaatggaatcttactgagtggcatcatatgtaagaagtcacttggt
acctcatcaggttcactgtgccacgttgttgctctggaaaaaaatgctgatgtttgccgg
gagttttacagcaatatacagacatgcgtaaacaattggttgatgatagaaggtcattca
atcggtatcggagatacaattgcagatgctcagacttaccaggatattcaaactcaaatt
aggaaagccaagcaagaagtcatagaggttatagagaaagcacataaggaggatttacaa
ccgacacctggtaacacattgagacaaacgtttgaaaatcaagtcaacagaattctaaac
gatgctcgtgacaaaactggttcgtcagctcaaaaaagtttgtctgatttcaacaacttt
aaagccatggtggtggctggatctaagggttcaaaaattaacatttctcaggtcattgct
gttgtggggcaacagaacgttgaaggaaaacgaattccttttggtttccgtcatagaaca
cttccacattttattaaggatgattacggtccagaagctcgtggttttgttgagaattca
tatcttgctggtttgactccaacagagttttattttcacgctatgggaggaagggaaggt
ctcattgacactgctgtcaaaactgcagaaactggatacatccagagaagattagttaaa
gccatggaagcggtgatggtgagatacgacggcactatacgtcagtgtaatgacttcatg
atacaactgtgttatggggaagatgggttggctggcgagaaagtggaatttcaaaacctc
gcaactcttaaaccaagtcacgccacttttaataagaaattccgatttgattattccaaa
gagcgtttcatgcggcgttgcatgaatgaagacgttgtaagaatgatacaaactgatgtc
accattcaacaagaattagaaactgagttcgatcaattacaacaagatcgtgaaaatatt
cgagccattttcccaactggtgatagcaaggttgtcttgcctgtgaacctgagtcgttta
atctggaacgcacaaaagattttccacattgatcttcgtagcccgtccaacctcaaccca
cagcgtgttattgagggtgtgcgagatttaagtaagaagttggtgattgtgtgtggtgag
gatagattgagtaaagaagcacaaagcaacgctactctgctattcaatgttcatctaagg
tccaccctatgttcacggagagtagccgatgaattccgtctctcagctgaagcgtttgaa
tggatcctcggtgaaattgagaccaaattccaacaagcgcaagtccaccctggtgaaatg
gtgggagctcttgctgcccaatcccttggtgaaccagccacacagatgaccctcaacact
ttccattacgctggtgtgtcagcgaagaatgtgacgcttggtgtgccgaggttaaaggaa
ttgattaacgtctcaaagaaacccaggaccccctcactcacaatatacttgattggccca
gctactcgggatgcacagaggtgtaaggatgttttatgtcgattggagcacgccacgcta
cgtaaagtgacagccaacactgcaatttattacgaccctgaccccatgaatacagtcatt
caagaagatcaagaattcgtgaacgtttattatgagatgccagattttgacgtcacaaga
atttcttcatggctgcttaggattgaacttgacagaaagagaatgacagataagaaactg
agcatggaacaaattgctgaaaagatcagcgcagggtttggagacgacttgaattgcatt
ttcaacgacgacaatgctgagaaactcgtgcttcgtattcggatcatgaacagtgaggaa
caaaaagcagatgaagacacagaagaacaaactgataaaatggaagatgatgtcttcctg
cgttatattgaagctaatatgttgactgacatgacattgcagggtattccacaaattgca
aaagtgtacatgcatttacctaaagaagaaaacaagaagagaattgtgataacaaaagaa
ggagagtttaatgcagtccaggattggatcctggagacagatgggacagctttgatgagg
attttatctgagagagatattgatcctgtccgaactacttctaatgatatttgtgagatc
ttctctgttctcggaatagaagcggtgagaaaagctttggagcgggaaatcaaccacgtc
atatctttcgatggttcatatgtcaattatcgtcatttggcgttactatgcgaggttatg
acatcaaagggacacttgatggcgatcacgaggcacggtattaatcgtcaagagacaggg
gcgctgatgaggtgttcgtttgaagagacggtcgatattttaatggaggctgcttcttca
gcagaaactgaccacatggatggcgtgtctgaaaacattatgcttggccagttagtaccg
ggtggaaccggttgtttcgggttattactggatgctgagaagtgtaaatatgcaatggag
ataccgactaatattggggttgttggaggaactggaatgttctttggttccatggcttct
ccaagctccatgtctccagccatgacaccatggaacagtggcgcgactccaggattcagc
ggctcctttacacctggtggctttggctccggcatgactccaagtgcggcttctttctct
ccagcccccacagagagctctggcttctcacccggctttagcccctcatggagtccagct
caantccccggcccttcaagccccgcatcaccatacattccttcacccaagcactcagct
atgtcnncctcttattcccccgccagccccagttactctccaacttcccccagttacagc
cctgcatcacccagctattccccatcaaacccaaaatactccccagcaagtccatcttac
agcccagcatcaccagaatacagcccatcgagtccaaaatatacaccatcatcaccatct
tactcccctgcctccccatcctacagtccatcctcaccaaactattctccatccagtccc
aagtactcaccatcaagtccatcttattcacccgcaagcccatcatactcacctacaagt
ccatcttactccccttcgagccctggctattccccctcctccccaagttattccccatct
agcccaggagcatcaagtcctgcatacagcggccaagctggctactctccaagcagcccc
tcttactcaccaacaagtccttcatattgcccggccagtccccggtacactccaactagc
ccaacatacaccccgggaggggacctctctccggcttcacccagctatagccctacttcc
ccaggtgcagagagcccagctagtccatcatacagcccaacaagcccttcttacagtcct
gcaagtccaatgtattctcctaccagccctggttatagtcctttaagtccaggttacagt
cctgcatcgccaagttatacaccaagcaccccaggtggtgggcaacaccatggtcaagct
aaagacagcgacgaagactaa
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integrated database retrieval system
