KEGG   Ciona intestinalis (yellow sea squirt): 100178614
Entry
100178614         CDS       T01056                                 
Name
(RefSeq) AF4/FMR2 family member 4 isoform X2
  KO
K15185  AF4/FMR2 family member 4
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100178614
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cin03021]
    100178614
Transcription machinery [BR:cin03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     100178614
SSDB
Motif
Pfam: AFF4_CHD
Other DBs
NCBI-GeneID: 100178614
NCBI-ProteinID: XP_009857622
LinkDB
Position
2:3229386..3250038
AA seq 1119 aa
MAHTSGSSAIHADRRRERMRRGELAAQPEEDIPSFPSEPRRITAERQDSLTNRIEHVLGD
MNEVQKHLGSEPNIWLGTSRNQQNLSRSQTYRNQGPQNHSSRSKPQSNSSVYSPGQEKSQ
IGSKRRDESSQQNNFYPKYQSSNLSRHNHNNNTSDRISSTPLPDHKGRSKSPRNGITEQA
HNRERLQSVDMPVAVENIFKEMLQMNEPLSEIQTPNIGQEFNFVKSETKIKEEPKEKSHA
VRPDLEDNAATMSSSDENSSDESDEESDDSDAEEGTNKWVLSGYLDDSAAANDSVTEQKP
EAAKQKNAESSHSSTRKAVTRGRPSERKNSVDTKTRNSSSRSSSVKGKTDDKSSERSKSA
SKGRLGSSHRSSPVRSQSLQRPTKPSSKAVQDVKRNNNKQSPLSERKSPVPKPQSNEQSA
NRNCNNSMLFSVSNETSSQTPSDQRHRVGQKSPMTAIKNHGRIAEKKHRGVSPSSQSSSD
SSCSGSEDEKSPTRWNSFRERSNSSSSNKPSVHSKKQNNSKSSIDRRSAPSALAKPDMDR
RKPPKPDQSNLRPPISQHDVKHRHPRSNESTPTSQETREGSVAKQPNPQSRPKSKKSSKQ
RRSVSSPVTNEPKPSSFPSLWVRILPSSSNDPEESYPDTHAPMDTFQPEPRPRSSTNRTA
AVSTGSETEKPLQRAKNVQVAVAASSSDWSPRTAMNKRKHNQPYDSTSVADQKSKRRKQE
TPSPTNSQGRQPTHSIAASESSQHSRKENFQWKDRRKGSRSPHNPSWNQEPTYNQNQPSS
YHEPANNIRPPQVKLETCQSTSHSASAGVASIVSEPDSSWPEQEKLLKSDQYMREGKRLK
HEGDAFTDSRTGRTRVGESLSRALVYYDAALCFIMNGYTLELENGNDRNESGSSHSPTSM
YHQTISLMDYIRKMRPHDDTEELAFKRLNLSCIRSQALLFLRIYKLKKDIANKYSEILND
QFKQTGNKSNRTPSPWHNVSGQNVVSPMSPAVPSPYGITIPGPSPVAGSTNYEPVSSSTQ
VSKMTSPPTSSTISVAPKLYDIIKHYHSITRSLMLAHEKWEQAEALQKEQVLSGGGTDFF
RNVETLCGRTLMLHSSLRDLVTYNKVVLHQLRAIKSPHD
NT seq 3360 nt   +upstreamnt  +downstreamnt
atggcacacacaagtggttcatctgctattcatgcagatcgccgcagagagcgcatgcgt
cgtggcgagcttgctgcccaaccagaggaggatattccgtcatttccttcggagccacga
aggataactgctgagaggcaggattcgctgacgaaccgcatcgaacacgtgctcggtgat
atgaatgaggtccagaaacatttgggaagtgaaccaaatatttggcttggtacatctaga
aaccaacagaatctgtcaaggtcacagacttatcgaaatcaagggccacaaaaccattca
tctcgttctaaaccgcaatcaaattcatctgtgtattcgccaggtcaagaaaaatctcaa
attggctccaaaagacgcgatgagtcaagtcagcaaaacaatttctacccaaaataccaa
tcctctaatttgagtcgacacaaccataacaacaatacatcagatcgtattagttcaact
cctctgccagatcacaagggccgttcaaagtcaccaagaaatggtattactgagcaggct
cacaacagagagcgcttacaaagtgtggatatgccagtggctgtggagaacatatttaag
gagatgcttcaaatgaatgaaccactcagcgaaattcaaactccaaacattggtcaggaa
tttaactttgtcaaatcagagaccaaaatcaaagaagagcctaaagaaaaatcccatgct
gttcggccagatctggaagacaatgctgctactatgagtagcagtgatgagaacagcagc
gatgagtctgacgaagagtcagacgatagtgatgcagaggaggggactaacaagtgggtc
ctcagcgggtatcttgatgactcagcagctgccaatgattcggtgactgagcaaaaacct
gaagctgccaagcagaaaaacgccgaaagttcacactcttctacgagaaaagctgtcaca
aggggacgccctagtgagcggaaaaactcggtagacacaaaaactcgaaattcttcatct
aggagttcttcagtaaaaggtaaaacggacgacaagtccagtgaacgttcaaaatctgct
agcaaaggtcggttgggttcatcgcacagatcttcccctgtgaggtcacaatcattgcaa
cgaccaacaaaaccatcgtcaaaagctgtgcaggacgtaaaacgtaacaacaacaaacaa
agtcctctttctgagaggaagagtcctgttcccaaacctcagagcaatgaacaatcagcg
aacaggaattgcaacaattccatgctgttcagtgtcagcaacgaaacttccagccagaca
cccagtgaccagagacatcgagttggacaaaaatctccgatgacggcgataaaaaatcat
ggccgcatcgctgagaaaaaacatcggggcgtttccccatcctcacagtcttcatcagac
tccagttgttccggatcggaagatgaaaaatctccgacccgatggaacagcttccgcgag
cgctctaattctagttcttccaacaaaccatccgtccatagtaaaaagcaaaacaactca
aaatcttcaattgaccgtaggtccgccccaagtgcccttgccaagccggacatggatcgt
cgaaaacctccgaaaccggatcagtcaaaccttcgacctccgatctcccaacacgatgtg
aaacaccgccatcctagatccaacgagtcaactcctacatcgcaggaaacgagggaaggt
tcagttgccaaacaaccaaacccacaatcgagaccaaaatcaaagaagtcttccaaacaa
agacgcagtgtttcatctcccgttaccaatgagccaaagccatcaagtttcccttcatta
tgggtgaggatacttccatcttcaagcaatgacccagaagaatcttaccctgacacccac
gcaccaatggacactttccaacctgagccacgcccccgatcatccaccaatcgcacggca
gctgtatctacaggcagtgagacagaaaagccattacaaagagcaaaaaatgtccaggtt
gctgttgctgccagctcaagcgactggtcaccccgtacagcaatgaacaaacgaaaacac
aatcagccttacgattccacttcagttgcggaccagaaatcaaaacgaagaaaacaagaa
accccatcaccaaccaacagccagggtcgacaaccaacacacagcattgcagcaagcgaa
agctcccaacattcacgtaaagaaaactttcaatggaaggatagaaggaaaggttccagg
tcaccacataatccaagctggaaccaggaaccaacttacaaccaaaaccaaccatccagt
taccacgaaccagcaaacaatatacgaccaccccaagtcaagctggaaacctgccaaagc
acttcccattctgcttcagctggtgttgcttctattgtttcagaacctgattcgagttgg
cctgaacaagaaaagttgctgaagtcggatcaatacatgcgtgagggtaagagacttaag
catgagggagatgctttcactgactcaaggactggtcgtacaagagtgggagaatcgctg
agtcgggctctcgtttattacgatgcagctttgtgtttcatcatgaatggctataccctg
gaactcgaaaacggaaatgatcgtaatgaaagtggttcttcccactcacccactagtatg
tatcatcaaaccatttcacttatggattacattcgaaagatgagaccacacgatgacact
gaagaactcgcatttaaacgacttaatttatcatgcattcgttctcaagcccttttattc
ttacgtatttacaagttaaagaaagatattgcaaacaaatattctgagattttaaacgac
cagttcaagcaaactggtaataaatcgaaccgtaccccatcaccatggcacaatgtaagt
ggacagaatgttgtttctcccatgtcacctgccgtaccttcaccttatggcatcacaata
cctggaccttccccagtggctggatcaaccaattacgagcctgtgtcaagctccacccag
gtaagcaagatgacttcccctccaacttccagcacgatctcagttgccccaaagctctat
gacatcataaagcattaccactcgatcaccagaagcctgatgcttgcccacgagaagtgg
gagcaagcggaagctcttcaaaaggagcaagtgctctctggaggtggcaccgattttttc
cgcaatgttgaaactctatgtggtcgcacactgatgttgcacagctcacttcgagatcta
gtcacttataacaaggttgttttgcatcaacttcgagccatcaagtcaccacacgattaa

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