Ciona intestinalis (yellow sea squirt): 100179276
Help
Entry
100179276 CDS
T01056
Name
(RefSeq) pre-mRNA-processing factor 39-like
KO
K13217
pre-mRNA-processing factor 39
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100179276
Spliceosome [BR:
cin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
100179276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
TPR_19
Suf
DUF5405
Motif
Other DBs
NCBI-GeneID:
100179276
NCBI-ProteinID:
XP_002123360
LinkDB
All DBs
Position
3:481162..483958
Genome browser
AA seq
748 aa
AA seq
DB search
MEVDSAADEGANYVTLDTVSNHDGDSDDGKDDEKIVEEETRSKSPEPISDVEDDPEVGDP
PCFDDDSIPIVPEEEVKVKVKESEEYLRYWKMVVDSPHDFTAWTYLLQLVEQDRKMALAR
RAYNNFFKRYPLCYGYWKKFSEIERKKGNLIKAQVILERGVRAIPLSIDLWVHVIDFYIK
HYKGPDAGSKKVRIVFERAMKAAGEEFRSEKLWNKYIKWEIDNKNWINVMKLYDRAMSTQ
TQHYSIFFNDLKEFVNTHAPQDLLMPEAFEKLLSEVRVTPPLPTLEKREQNKQKEKAKKN
PDAIDIDSESDEDEGATVDDVDMEEAPPGVEEHEKPPNEEEQKHMRQLIIKEKKKIFEAT
ERIVTKIWAFEEGVKRPYFHVKQLERAQLKNWREYLDMEINNGNHHRIVLLFERCLIACA
LYEDFWLKYAKYMSNHDVVKAGKIYERACTIHLPKKPTIHMQWAAHEELQGNTSTAIEIL
ENLNKVLPGMAMIKMRRVALQRRAGNIQAAEDILISYVTVAEKDKEILFYTRKLAWFLFK
ISNKKDEARKLLKDLIPKFKEEINLYNDLVEMEFQHASTSSNDQDELLALEAFDLAIANE
KFSEDQKFSFSQRKLEFLEDYGCDVKRLQKTYEEHQKLVRSQKKRHQSEAGDASNPAAKK
AKTDTPITVVASTPNQLSNGSRYSATSSTAPVSYVTTPTQSTTAAYSATDPSLYYQQNYW
NYQQKASENPQYNYSQWSQYYQQQQGHQ
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgacagcgcggcggatgaaggagcaaattatgtcacgctggatactgtgtcg
aaccatgatggggattctgatgatgggaaagatgatgaaaaaatagtggaggaggaaacg
aggagcaaatctccagagccaatatctgatgttgaggatgatccggaggttggagatcct
ccttgttttgatgatgatagcatccctattgttcccgaggaagaagttaaagtgaaagtc
aaagagtcggaagaatatcttcggtattggaaaatggtagtggacagtccacatgatttc
acagcctggacttacctgttgcagttggttgagcaagatcgtaagatggcgcttgctcga
agggcttacaacaacttctttaagcggtatccactctgctatggttactggaaaaagttt
tctgaaattgaaagaaagaaggggaatttgataaaagcacaagtgattttggaaagaggt
gttcgtgccattccactaagtattgatctgtgggtacatgtgattgatttctatattaaa
cattataaaggtcctgatgctgggagcaaaaaggttcggatagtgtttgaacgagcaatg
aaagctgctggggaggagtttcgatcggagaaactttggaacaaatacataaaatgggaa
attgacaacaaaaattggataaatgtcatgaaactttatgatagagccatgtccacacaa
acacaacactattcaatatttttcaacgacctgaaggagtttgtgaacacgcacgcacct
caggatcttcttatgccggaagcatttgaaaaacttctttctgaggttcgagtgacacct
ccacttccaacattagagaaacgggagcagaacaaacaaaaagagaaagcaaagaaaaat
ccggatgcgattgatatcgatagtgaaagtgatgaagatgagggagcgactgtggatgat
gtggacatggaggaagctcctccaggtgtggaggaacacgaaaaacctccgaatgaggag
gagcagaaacacatgcgtcagttgatcattaaagagaaaaagaaaatatttgaggcaacc
gagagaattgtcaccaaaatctgggcttttgaggaaggggtcaaacggccgtacttccat
gttaaacagctggaacgggctcagttgaaaaattggagagagtatttagatatggagatt
aacaatgggaatcaccatagaattgtgctgctgtttgaacgctgccttattgcctgtgcg
ttgtatgaggatttttggctcaaatatgcaaagtatatgtctaatcatgatgtggtgaag
gcaggcaagatatatgagcgtgcttgtacgattcatttacccaagaaacccacaattcat
atgcagtgggcagctcatgaagagttgcagggcaacacctccactgcaattgaaatcctg
gaaaacctgaacaaggtcttgccggggatggccatgattaaaatgcgccgagttgccctt
cagcgcagagcaggtaacatacaagcagctgaagatatacttataagctatgttactgtt
gcagaaaaggacaaagagattttgttttacactcgcaaactagcatggttcctttttaaa
atatccaacaagaaagacgaagctcggaagttactaaaagatttgattcccaagttcaag
gaagagattaacctttacaatgatttagttgaaatggagttccaacatgcaagcacgagt
tccaacgaccaggatgagctacttgctttagaagcatttgacttagctattgcgaacgaa
aaattttccgaggaccaaaaattctctttttctcaaagaaaactagaatttctagaagat
tacgggtgtgacgtgaaacggttgcaaaaaacttacgaggaacaccagaaattggttcgt
agtcaaaaaaagcggcaccaatcagaagcaggagatgcttctaacccagctgctaaaaaa
gcgaaaactgatacaccgattactgttgtagcttccacgcccaaccaactatcgaacggt
tctcgatattcagcaacatcaagcactgcacctgtaagttatgttacaacaccaacacag
tcaactactgcagcttattcagccaccgaccctagtctgtattatcaacagaattattgg
aactatcagcaaaaagcgagcgaaaacccgcagtataactacagccagtggagccagtac
taccaacaacagcaaggacaccagtga
DBGET
integrated database retrieval system
