Ciona intestinalis (yellow sea squirt): 100180620
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Entry
100180620 CDS
T01056
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cin03036
]
100180620
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100180620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
Helicase_C
Chromo
CHD1-like_C
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
100180620
NCBI-ProteinID:
XP_018668181
Ensembl:
ENSCING00000007700
LinkDB
All DBs
Position
7:4122720..4154823
Genome browser
AA seq
1867 aa
AA seq
DB search
MPSEPLKHRSSKSQMSDETSSSSSEASEDEESTDAETSAAETEEAQQSTSSGSNYLHHPW
LLETREDGKVDETSQNQHQHETHDSDNQDNSSNNSQDSSSSSGESSSDDSTSSDEESSKR
SSHKNSKSKDLPEWESNPQIYGLRRSSRQKKEPQRLTAKQSCSDEDGNFGRKHLKEKDPT
STLSGSSSEESNEYESSASWKRGKGNLKKSKLSQMRAKLMGKKTKNIKSYSKPRNRRMET
STMSDDDTSDDNQPVRASSRIQRKSNTVSYRENDSTQETDSDDLVEINPNEEVEEDPDTE
AIEKIMDSRVGRLGATGAKTTAYAVKRSSDPNHGFNVKTDEAETQYLIKWKNWSHLHNTW
ESEETLRTQNIRGMKRLENFVRKNEEINVWLNAALPEDKEYYYCQQAMNNNVLQNYLKVE
RVIARSAKKNQQETWDYQVKWCGLPYSECTWEEESLIKEFQDEINAFEMRQDNPCIPKRD
CKVLRQRPRFVPMSRQPDWFQGKLQLRDYQLQGVNWLAHSWCKGNSVILADEMGLGKTIQ
SISFLSYLYHTHELYGLFLIIVPLSTMTSWQVEFQTWAPYMNVIVYMGDQSSRATIREVE
WMFPNKHYKFNAVLTSYEILLKDKSFLGSHSWAVIAVDEAHRLKNDDSLLYRSLKEFKSN
HRLLITGTPLQNSLKELWALLHFIMPDKFETWSDFEEEHAKNRDSGYTSLHKVLQPFLLR
RVKKEVEKSLPSKVEQILRVPMSSLQKQYYKWLLTKNYAALTKGGRGSFTSFCNIIMELK
KCCNHAFLVKAPETEATSSEMLLKVLLRNSGKMILLDKLLIRLKENGHRVLIFSQMVRML
DIIQEYLVVRRLQFQRLDGSVSSDLRRRALDHFNAEGSEDFCFLLSTRAGGLGINLATAD
TVIIFDSDWNPMNDLQAQARAHRIGQKNQVNIYRLVCAGSVEEDIIERAKKKMVLDHLVI
QRMDTSGKTVLFKTSTPSSTTNNPFNKDELSAILKFGAEELFQEAEGEEKEPECDIDEIL
RRAETRQDQPSMGVGDELLSAFNVATFTLDEEEPIQVSKDWENIIPEKDRKKIEEENRLK
QEAELYLPRRARKKMKTQGRSDSENGSDSASSDEEDDESLPKRRGRPPRSGGVEGEDYVK
GFTTAEVRKFVRSFRKFGDPLNRLDAIARDAELSEQSEADLRRLGEQLHSRLIQMSNEVK
NSQDGNEKEEKHGRGRGPSFRLAGVSVSVKTTLACIEDLQPVVDVIPKDSEERKNFHLNI
PVRPMYVWDCAWGLGDDSHLLIGIYEYGMGSWEQIQADPSLKLDTKILRPNNEKPQAKQL
QSRAEYLIKLLRKAQDQNHPGVPQPTPTHRSRRKGVPHKDPKPGAPPVTDKGTKSKRGSR
KIKSKARVDATGSDVDADTAVSAANHDSAKHENGGIVATHDEGKRKRRKRKAAEADLTKQ
ELNEVGTKEKRRKRSSKDQQQNKVHKNKGPVHITIKSDPVPVGSSEFSGELNAETFRECK
ERLRPVKRALKQLNRPPPAPEGSEEQIRVDHTLRCLLQIGDRVIECLRELHDPERIKKLR
RNLWIFVSKFTEYNAEKLHKLYRVAIKKREHDKKKSDPTEVKKSTTTATTPATKPNNTGS
SRKIQHKSLTNKKRSTTPPITKETNEPHTSPSKEKPAENDSKSANRPPTKPTTVDSHPDE
KANRFAAESWNRRERSPSEYRQREGFTKHQRSPYSEHRIPPPGRGRSPTDRHYREHEYDR
HRDFRRSPPRHRRPSPERYRRPHHEYRGSPPPEFRGVPPGMERDWDPRMGPRPYYNHPPM
PSRSPPGRSQHPDYRRGWRRQQDGYPYQNDGRRRYYGGSPPVRSSPAGYSPTQTEVPSEP
LKRAEKT
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atgccatcagaaccgctgaaacatcggtcgtcaaaatcgcaaatgtcagatgaaacttct
tcatcaagttccgaggcttctgaagatgaggaaagtactgatgcagagacgagtgctgct
gaaacagaagaagcacagcaatccacatcttccgggagtaactatcttcaccatccatgg
ttgctggagacgagggaagacggaaaagttgatgaaacttcacaaaatcaacatcaacat
gaaacccatgattctgataaccaggataactcatctaataattcacaagactcttcctcc
agctccggtgagagcagtagtgatgactccacttcctctgatgaagaatcctccaaaagg
tcttcccacaaaaattcaaaaagcaaagatttgccggaatgggagagtaacccacaaata
tatggacttagacgttcttcaagacagaaaaaagaaccgcaacgattaactgctaaacag
tcttgctcggatgaagatggaaactttggaagaaaacatttgaaagagaaagacccaact
tcgacattaagtgggtcaagcagtgaagaatcgaacgaatacgaatcatcagcttcttgg
aaacgagggaaaggaaatttaaaaaaatcaaaattatctcagatgagagctaagcttatg
ggcaagaaaactaagaatattaaatcttattcaaagcctcgtaatcgacgaatggagaca
tccactatgtcggatgatgacacatcagatgacaatcaacctgtaagagcttcatccagg
atacaaaggaagagcaacactgttagttacagggaaaatgattctacgcaagaaaccgac
agtgatgatcttgtagagattaatcccaatgaagaggtggaagaggacccggacacagag
gccattgaaaagatcatggatagcagggttggtcgccttggtgccaccggtgcaaaaacc
acagcatatgctgtgaagaggtcatcagatcctaaccatggttttaatgtaaagacagat
gaagctgaaactcaatacttaatcaaatggaaaaattggtctcaccttcacaatacatgg
gaatccgaagaaacgttaagaacacaaaacattaggggcatgaaacgcctcgaaaatttt
gtgagaaaaaatgaagaaataaatgtttggctgaatgctgccctgcccgaggataaagaa
tattattactgccaacaagcaatgaacaacaatgtactgcaaaactacttgaaagttgaa
agagttattgcgcgatctgccaagaaaaaccagcaagaaacctgggactaccaagttaaa
tggtgcggcctgccttacagtgaatgtacatgggaagaggaatctcttattaaggaattt
caggatgaaataaatgcgtttgagatgagacaagataacccttgtatcccaaagcgcgac
tgcaaggtattacgccaacgtccacgttttgtcccaatgtctcgacagccagactggttt
cagggcaaactacaactgcgcgattaccaactacaaggtgttaactggctggcacactca
tggtgcaaaggcaacagtgtaatacttgcggacgagatgggccttggtaaaacaatacaa
agcatatctttcctatcatatctctaccacacgcatgagctgtatggattgtttctcatc
atcgtaccactgtctactatgacttcctggcaagtggagtttcaaacatgggcgccgtat
atgaacgttattgtatacatgggagaccagagcagcagagccacgatccgtgaagtagaa
tggatgtttcccaacaaacattacaagttcaacgctgtgttaacgtcgtatgagattcta
cttaaagataaatcctttcttggttctcattcatgggctgttattgctgtagacgaagca
catcggctcaaaaatgatgattctcttctttatcgttcgttgaaagaattcaaatcaaac
catcgccttcttataaccggtacaccgcttcaaaactcattgaaagagttatgggcccta
ctgcatttcattatgcctgataagtttgaaacatggtctgattttgaagaagagcacgca
aagaaccgtgattcaggatacacctcattacacaaagtgttgcaaccttttttacttcga
cgagtgaagaaagaagttgaaaagtccttgccgtcaaaagttgaacaaatattgcgagtt
cctatgtcttcattgcagaaacaatattataagtggttgttgacgaaaaactacgctgct
cttacgaaaggtggtcgtggtagttttacttcgttttgtaacatcatcatggagttgaag
aaatgttgcaatcatgctttccttgtaaaagctcctgaaacagaagccacaagctcagag
atgttactgaaggtcctgctaaggaacagtgggaagatgattctacttgataaactcctc
atccgattaaaggagaacggacaccgagtcctcatcttctcacagatggttaggatgttg
gacatcatacaggaatacctcgtggtcaggaggctgcagtttcagagattagacggatca
gtgagcagcgatcttcgtcgacgagcacttgatcactttaacgctgaaggatcagaggac
ttttgcttcctcctctcgacgagagcaggaggtcttgggatcaacctcgcaactgccgat
accgtcatcatattcgattcggattggaatccaatgaatgatcttcaagcgcaagcaaga
gctcatcggatcggacaaaagaatcaggtgaacatataccgacttgtgtgtgctggaagt
gtggaagaggacattattgaaagagcaaagaagaagatggttcttgatcatcttgtgatc
cagaggatggacacatccgggaagacggtcctcttcaaaacctccactccatcttcaaca
acaaacaacccgtttaataaagatgaattaagcgctatccttaaatttggtgcagaagaa
ttgtttcaggaggcggagggtgaggaaaaagaacccgaatgtgacatagatgaaatatta
agacgagcagaaacgagacaagatcaaccaagcatgggagtgggggatgaactactgtct
gctttcaatgttgctacattcactcttgatgaagaggagccgatccaggtgagcaaagat
tgggagaacatcatccctgagaaggatcggaagaagatcgaggaggagaatcgactcaaa
caagaagccgagctttaccttccaagaagagcaaggaagaaaatgaagacccaaggacga
agtgacagcgaaaatggatcagattctgcatcttcggatgaagaagatgatgaatcgttg
ccaaagaggagaggaagacctccacgatccggaggagtggaaggggaagattatgtgaag
ggattcaccactgcggaagttcggaagttcgtcagaagtttccggaagtttggtgatcca
ttaaacaggttggatgctattgctcgtgatgcagaactcagcgaacaatcagaggcagat
cttcgtagacttggagaacaacttcattcaaggttgatacagatgagcaatgaagttaaa
aactcacaagatggaaatgaaaaagaagagaaacatggcagaggtagagggccttcattt
cgtctcgctggtgtttcagtatcggttaaaacaaccctggcatgcatagaagatcttcaa
cctgttgttgatgttattcctaaagattcggaggaaaggaaaaattttcacctgaatata
ccggttcgaccaatgtatgtatgggactgtgcatgggggttgggtgatgattcacatctg
cttataggaatatatgaatatgggatgggaagttgggaacaaatacaagccgatccctca
cttaaacttgatacaaagatacttcgtccaaacaacgagaaaccacaagcgaaacaacta
caaagtcgagctgaatatctcatcaaacttttacgtaaagctcaagatcaaaatcacccc
ggggttccccaacccacacccacacatcggagtcggagaaagggggttccccacaaagac
cccaaaccaggagccccgcctgtcacagataagggaacaaaatcgaaacgcggaagtcga
aaaattaaatcaaaagctcgagttgatgcgacaggaagtgatgtagatgctgacacagca
gtttctgccgcaaaccatgactcagcaaaacatgaaaatggtggaatcgtagcaacacat
gatgagggtaaacgaaaacgtaggaaacgaaaagcagctgaagctgatttaactaagcag
gagttaaatgaggtcggtacgaaggaaaaacgtcggaaacgcagctcaaaggatcagcag
cagaataaggtgcataaaaataaaggaccggttcatattacgatcaaatcagatcctgtt
cctgtcggctcgagcgaattctcgggggaattaaacgctgaaactttccgcgaatgtaaa
gaacgtctgcgaccggtgaagcgcgcacttaagcaacttaatcggccaccaccggcacca
gagggcagtgaagagcagatcagggttgaccacacgctgcgctgtttattacagataggg
gaccgtgttattgaatgtttgagggagcttcacgacccagaaagaatcaaaaagttgcga
aggaatttgtggatatttgtttcaaagttcacagaatacaacgctgagaaacttcataag
ttatacagggtagctataaagaaacgggaacatgacaaaaaaaaaagtgatcctacagaa
gtaaagaaatcaacaacaacagcaacaacgcctgcaacaaaaccaaacaacacagggagt
tctagaaaaattcaacacaaatcacttacaaacaagaaacggtcaaccacgccaccaatt
actaaagaaaccaatgaaccacatacttcacctagtaaagaaaaaccggcagaaaatgac
tcaaaatcagcaaacaggccaccaaccaagccgactactgttgattctcaccctgatgag
aaagctaacagatttgcggccgagtcctggaacagaagagaaagatcgcccagtgagtat
cgtcagcgtgaaggtttcacaaagcatcagaggtctccgtactcagaacatcgaatccct
cctccgggaagagggaggagtccaacggatcgacattacagagaacatgagtatgatcgg
cacagagacttcaggaggtcgcctccaaggcaccgccggccttctccggaaaggtaccgt
aggccgcaccacgagtaccgaggttcgccacccccggagtttcggggcgtgccgccgggt
atggaaagagactgggaccctcgcatggggcctaggccgtactataaccacccacctatg
ccctcaagaagtccgcctggtcgttctcagcatcccgattaccgccgtggttggagaagg
cagcaggacgggtatccttaccagaacgatggtcgcagacgttactatggtggttctcca
cctgtgcgttcgtcgccagcaggttatagtcctacacagacagaggtaccttccgaaccg
cttaaacgcgccgaaaaaacgtga
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