Ciona intestinalis (yellow sea squirt): 100181519 Help Entry 100181519         CDS       T01056                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03030   DNA replication cin03410   Base excision repair cin03420   Nucleotide excision repair cin03430   Mismatch repair Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     100181519    03410 Base excision repair     100181519    03420 Nucleotide excision repair     100181519    03430 Mismatch repair     100181519  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:cin03032]     100181519    03400 DNA repair and recombination proteins [BR:cin03400]     100181519 Enzymes [BR:cin01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      100181519     6.5.1.6  DNA ligase (ATP or NAD+)      100181519     6.5.1.7  DNA ligase (ATP, ADP or GTP)      100181519 DNA replication proteins [BR:cin03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     100181519  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      100181519 DNA repair and recombination proteins [BR:cin03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      100181519    NER (nucleotide excision repair)     Other NER factors      100181519    MMR (mismatch excision repair)     Other MMR factors      100181519 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  100181519 NCBI-ProteinID:  XP_009858016 LinkDB All DBs Position 3:complement(2938563..2950947) Genome browser AA seq 1060 aa AA seqDB search MLIGRSIKLLLTWHVKTYNCCVISPFQATSLWQHSKRLQNRNLFCLKQFGTDRLREILRI PSATMPQKSIASFFGSKPSKKSPPATLQNKSSTKQENVKSPLKNSPSKKSPSKKSASESS PVKLLPSENSPVSSPKKSVPNPKKIKNIESPVKIKKRKAQALISDSSEEEMDAVERSKTP PPRKSPSSTRKVNLNQFKAKESGSDSDGVPNPPRDVKVTPNGTVKRKTARKSFQASKRLK MNGNSSPEENEMKDEVKEEPGKDKEVEDESMEVEASDVQESGEREENNVTESINEGSNSD SDHKVTPDTSSKKTKPKSPKHESSSDKEAKTEVSPNKTKSPASQKKTAVKKSPNTNSKSK KSTKTSPKKEKQDSTPAAKPPKKFSSFFQSKDVAPEDNDEKKIKPDAYNPGRKNYHPVDH ACWENGKKVPYLALARTFSLIEETSGRLRTIEILSNFLRSVIALSPNELITCIYLSLNKL APAYEGIELGIGENLLMKAVAEATGRNIAKIKVDVGNTGDLGLVAENSRSNQKMMFTPAA LTVDGVFKKLKQIAAISGGSSMSQKVSLVKSLLVACKHCEARYLMRSLGGKLRIGLAEQS VLVAIANAAYLTPPGQDFPPAIINAGEKIPAETLKSKMDEKALIVKTTYSELPNYDIVIK TMLEHGVDKLPDHCRLTPGIPLKPMLAHPTKGVSEVFNRFDKSEFTCEYKYDGERAQIHL LEGGEVRIYSRNQENNTSKYPDIISRVPAMLKDEVTSCVIDSEAVAWDTDKKQILPFQVL STRKRKDADLSTIKVQVCIYAFDLLYLNGESLVRKSFRERRKLLLDNFNVCDGQFVFAES QDTTDTDKIAEFLEESIKGNCEGLMVKTLDDDATYEIAKRSHNWLKLKKDYLDGVGDTLD LVVIGGYKGKGKRVGNYGGFLLACYDEESEEYQTICKIGTGFSDQNLADHAIFFNQHLID QPKSYYRLNGSDADQWFEPVQVWEVKAADLSVSPVYAAANGIIDPERGISLRFPRFIRIR DDKKPEEATNSQQVADLYHKQQQIQNQLKTKDSNKDVEYY NT seq 3183 nt NT seq  +upstreamnt  +downstreamnt atgttaattggtagatcaataaagttgttactgacgtggcatgtaaagacttacaactgt tgtgtaatctcaccttttcaagccacaagtttgtggcaacattctaaaagattacagaac aggaatcttttttgtttgaaacagtttgggacggataggttaagagagatactaagaata ccaagcgctacaatgcctcaaaaatccattgcgtcatttttcggcagcaaaccgtcgaaa aaatctccacctgcaactttacaaaacaaaagttccaccaagcaggaaaatgtgaagtct cctttaaaaaattcgccttcgaaaaagtcaccttcaaaaaaatctgcttcggaaagttct cctgtaaaacttcttccctcagaaaattctcctgttagttcaccgaaaaagtcagttccg aatccgaaaaagataaaaaacatagagtcacctgtgaagataaaaaagaggaaagcacaa gctttgatctcggattcatctgaagaagaaatggatgccgtcgaaagatcaaaaactcct cctcccaggaagtcaccttcctcaacaaggaaagttaatcttaaccagtttaaggcaaaa gaatctgggagcgattctgatggagttccgaatccaccacgtgatgttaaagttactcct aatggaacggtgaaaagaaaaactgctcgtaaaagtttccaagcttcaaaacgtttgaag atgaacgggaattcaagtccggaggaaaacgagatgaaagatgaagtgaaagaggagccg ggtaaagataaagaggtggaagatgagagcatggaagtagaagcatctgatgtacaagaa agtggtgaaagagaggaaaataatgtcactgagtcgataaatgaaggatcaaactctgac tcggatcacaaagttacacctgacacttcttcaaagaagactaaaccgaaatctccaaaa catgagagctcatctgataaagaggctaaaactgaagtatctccaaataaaactaaaagt cctgcatcccaaaagaagacagcagtaaagaagtcacccaacacaaattccaagtcaaaa aaatcgacaaaaacatcgccgaaaaaagaaaaacaagactcaacaccagccgcaaaacca cccaagaaattttccagcttcttccagtccaaagatgttgctcctgaagataatgatgag aagaagatcaaaccagatgcatataatcctggaaggaagaattatcatccagtggatcat gcttgttgggaaaatggaaaaaaagtaccatatttggctctcgcaagaacttttagtctc attgaagaaacctctggaagattaaggacgattgaaattctaagcaactttcttcgaagt gtgatcgctctgtctcccaatgagctgataacttgtatatacctcagtctcaataaactt gcaccagcttatgaaggaattgagcttggcataggagaaaacttgcttatgaaagcagtt gccgaggcaacaggccgcaacatcgctaaaattaaagttgatgtcggcaacactggagat ttgggacttgtagctgagaacagcagaagcaaccagaagatgatgttcacaccagctgct ttaactgtagatggcgtgtttaaaaaactgaaacagattgcagcaatttctggaggctcg tccatgagccagaaagtttcccttgttaaaagtttgctggttgcatgcaaacattgtgaa gcaagatacttgatgaggtcccttggtggaaaactgaggattggtttggctgaacaatca gtcttagttgcaattgctaatgcagcgtatttgacaccaccaggacaagattttccgccc gctattataaacgctggtgaaaaaattcctgccgaaactttgaaatcaaaaatggatgaa aaggctcttattgtgaagactacatacagtgaacttccaaactacgatattgttatcaaa acaatgcttgaacatggggtggataagttgccagatcactgcagacttacaccaggtatt ccacttaagccaatgttggcacatccaacaaaaggtgtttctgaagtttttaatcgtttc gataaaagtgagttcacatgcgaatacaaatatgatggagagcgtgcacagatacatcta cttgaagggggagaggttcggatatacagcagaaaccaggaaaataacacatccaagtac ccagatattatctcaagagttccagcaatgctaaaggatgaagtgacatcgtgtgttatt gattcagaagcagtggcatgggatacagataagaagcaaatcctacccttccaggtgtta agtaccagaaaaaggaaagatgctgatttatcaacaattaaagtgcaagtttgcatttat gcgtttgatctgctgtatcttaatggagagtcacttgttcggaagtcatttcgtgaaaga agaaaattacttttggacaatttcaacgtttgtgatggacagtttgtgtttgctgagtca caggacacaacagatactgacaaaattgcagagtttcttgaagaatcaattaaaggtaac tgtgaagggttgatggtaaaaacattagatgacgatgccacgtatgagatcgcaaagcgt tcacacaactggctgaaactaaaaaaggattatttggatggagtaggcgacacacttgac ttggtagtgattggtggttataaaggcaaaggtaaaagggttggtaattatggagggttc ttgcttgcttgttatgatgaggaaagtgaagaatatcaaactatttgtaagattggtact ggattttcggaccagaacttggcagatcatgcaattttctttaaccaacatctgattgat caaccaaaatcatattatagattaaatggtagtgatgctgatcaatggtttgaaccagtt caggtttgggaagtgaaagccgctgatttatctgtgtctcctgtatatgctgctgctaat ggaattattgatcctgagcgcggaatttcgctacgttttcctcgttttattcgaataaga gatgacaagaaacctgaagaagcaaccaacagtcaacaggttgctgatctgtaccacaaa cagcagcagattcaaaaccagttgaaaacaaaagattccaacaaagatgttgaatattat tga

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