Ciona intestinalis (yellow sea squirt): 100182911
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Entry
100182911 CDS
T01056
Name
(RefSeq) MAM and LDL-receptor class A domain-containing protein 1-like
Organism
cin
Ciona intestinalis (yellow sea squirt)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MAM
Astacin
CUB
Motif
Other DBs
NCBI-GeneID:
100182911
NCBI-ProteinID:
XP_018668654
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Position
8:complement(4749205..4762096)
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AA seq
1804 aa
AA seq
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MDLSNFLLVMVVMFLQQTSVNCGALTRSDFVNKLTRERRSVSEQSVQVNEDLEAVVYTLN
RPVGGTRRTPGSLQELFAQFRKTGTSFTAPVIQTTGEVRTTSSSNETEGTGNPETSNSPD
VEAEIQSEENQHDVTISSSVDETAPGVDPNDVEEIARKRHYAAKDGFAKIIDINQRVGVR
GVKQGDMRMSLNRNSAGGSDKWPKTRSGPNRGLVRIPYKISSQYNRTQLAVIRSAMATFT
RHTCLRFVPRRTEVAYIFISNGKGCWAYVGKTGYSSQTVSLGIPGCVAKGIVLHEFMHVA
GFQHEHSRSDRNRYVQILRQNIQGDMTMNFDLYNDTVNYVVYDYNSVMHYSKTAFSKQIY
LPSIQVIPKRKPEPIIGQRERLSPYDIEEVKYLYDCGAGTYQRCGRDFFNLATGSFNSPS
YPSPYPAEAHCTWNITVRPGRFVNVTFKGIDISDSPLCQNDVILIHDGKNAAAPTMRTVC
GTQTGDISIVSTGRSMFIMFSSDPTRDSNRGFRAIFRETRLPGRTARALAMPTLPPITHS
LGRFQCDFDQGTCGMTQDTLDQLDWIRSRGPTPSRNTGPFFDNTNGQGYFMFVESSLPAE
AGDNAIIRTPWLNGVNFCVTFSYHMYGAYMGSLRLYALEKRTTDGYGHEVLLWEKHGNHG
RNWLTQEINYNAGNNVESVHFYWEVFVFYYQSDIAIDDIDISPGTCRSTPVATTTSPRLV
VWTTNRRPTTPTTTPPTTATTTRATTTTRSTVPTTTTRRTIPTTLPPVAYASINCTFDND
LCGWTQSRSDTFDWTQRQGPTPSHSTGPTSDHTTQNGMYMFIEASSPRKLGHKAQLVSPL
ITPQTHCLHMFYHMYGRQIGTLTVAQTIGGVRTNLIELTGEKGNLWNSLSVEINSGSVRK
SSRRSDREERQFIRSDENTRENPTQDPDLDVASTNTQHDSMVVGTRQTGLLQAHPDLRVI
IEGTTGRGYAGDIAIDDVVITDGPCDATPSVAPVVLANDFNCNFDVDICDMIQNGDNLDN
FDWTRNSGPTGSAATGPSTDHTTGNEQGYYMYIESSSPRMGNQIAELTTPKMTPHQYCVR
FFSHMWGSATGAMRVFSIEELPGTSSDSRLRQLNVVGNQGDSWIAREFDFVHNTNALNVK
FVFQGKVGPSFTSDIAMDDLTITPGTCQASSSTTAPTTTTTRRTTTTTRPTTTTTTTTTR
PTTTTATTITPTTTTTTTTQPTTTTRLTRRSTTSSSTTTTTTTVAPTTTTTTTTAPTTTT
TTTPPPTTTTPTTTTTTTTTPATTTTLAPVNIIPTDFACDFDASLDCGITQSTTDDFNWI
RHRGKTSSGGTGPLADHTSGTTSGYYMYVEGSRPRRRNHEAIISTPSLGISKAKRCVTFW
YHMWGSGMGTLDVTAEFATPSRPSVRTNGGALPTNTSSVFRRQGNQDRNWLSARITLDQH
QSYMGGSVVLHFRAIRGDTFQTDLAIDDICTSEGPCDSNNRCNAAGRLIATTTRAVAATT
TTTTPATTTTGSTTTVSTTFLATTTLDPLLRLCVGMPLCTFESRQPNNQRPRTASVAPPP
GRGASLDLGPHDPHAPYANDLMCGWKQLVQRDQFNWTRHSGATVSRGTGPPGDHTTTRGY
YMYIETSSPRKMNDKAFLQTYLMFATDYCLDIYYNMYGVFAGRLSVRSVQRLTNGRTTLS
YLKNVAGNQGTRWKNMKVQYRPPRNAREVAFRLEGVVGKDYRGDIAIDDIAIHPGRCDAC
ARPSHSFTNNLNQQQSFSTGCAHARLFYVRCCSLTQEKVVYRRVDNCDQDMFSPPRLNWF
CNNM
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atggatttgtccaatttccttttagtgatggtcgttatgtttttgcaacaaacttcagtg
aattgcggcgcactgacaaggagcgatttcgtcaataagttgacgagggaacggagatca
gtctccgagcaatctgttcaagtgaacgaagaccttgaagctgtcgtctacactcttaac
cgaccggtcgggggaactaggagaacacctggttctttgcaggaactttttgcacaattc
cgtaaaaccgggacgtcttttactgccccagtgatccaaaccaccggcgaagtaagaact
acttcttctagcaatgaaacagaagggacagggaacccagaaactagcaattcaccagat
gtcgaagccgaaattcaaagtgaagaaaatcaacatgacgtcaccatttcgtcatcagtg
gacgagacggcgccaggcgtagacccgaatgacgttgaggagatcgctcgtaagcgccac
tatgcggcgaaggacggtttcgcaaaaatcatcgacatcaatcaacgcgttggagttaga
ggggtaaagcaaggagacatgcgcatgagcctgaaccgtaactcagcaggtggaagcgac
aagtggcccaaaaccagatctggtccaaatcgtggcttggttagaattccgtacaagata
tcaagtcaatacaaccgcacgcaattagccgttattcgatctgcaatggccacgtttaca
agacacacatgccttcgatttgtcccaaggcgcactgaagtcgcgtatatttttatcagc
aacggaaaaggttgctgggcatacgttggtaaaactggctactcctcacaaactgtatcg
cttggaattcccgggtgcgtggctaagggtattgtccttcacgagttcatgcatgttgct
ggcttccaacacgaacattctagaagcgatcgcaaccgatacgttcaaatcctaagacaa
aatatccaaggagatatgacaatgaatttcgatctttacaacgataccgttaactacgtc
gtgtacgactacaacagcgttatgcattacagcaaaactgcattctccaaacaaatttat
ctgccgtcgattcaggttataccaaagagaaaaccggaaccaattattggacagcgagaa
cgtttaagtccctacgacatcgaagaagtcaaatatctttacgattgtggagcaggaaca
taccaacgatgtggaagagatttcttcaaccttgcaactggttcgtttaacagtccaagt
taccccagcccttacccagcggaagctcactgtacatggaacattaccgtacgaccagga
cgtttcgtgaacgtcacgttcaagggaattgacatcagtgattccccgctatgtcagaac
gacgttatacttatccacgatgggaaaaatgcggctgcccccactatgaggacagtctgt
ggtactcaaactggagatatttctattgtcagcactggcagaagcatgttcattatgttc
tcgtctgacccaacgcgagattcgaaccggggtttccgtgcaatattccgtgaaacgaga
cttcctggtagaactgctcgagcactagctatgccaaccctacctccgatcacacactca
cttgggagattccaatgcgatttcgaccaaggtacttgcggtatgacacaagacacgctc
gaccaacttgactggataagaagccgaggcccgacgccaagccgtaacactgggccattt
tttgataacacaaatggacaaggttattttatgttcgtggagtcgtcgctacccgcagag
gcaggagataatgcaattattcggacgccttggctcaatggagtcaacttttgcgttacc
ttcagctatcatatgtacggtgcttacatgggcagtctgcgtttatatgcacttgaaaag
agaacaactgatggttatgggcatgaagtgctcttgtgggaaaaacacggaaaccacggt
cgcaactggctcacacaagaaataaattacaacgcaggaaataacgttgagtccgttcac
ttctactgggaggtgtttgtcttctactaccaatctgacatcgcaatcgacgatattgat
atttcacctggaacatgtagatcaacaccggttgctacgaccacttcccctaggttggtt
gtatggacgaccaaccgaagaccaacgacaccaacaacgacaccaccaaccactgcaaca
acaaccagagcaaccacaactacaagatctaccgtccccaccacaacgaccagaagaacc
atacctacgactctaccaccagtggcttatgcaagtattaactgcacgtttgacaatgac
ttatgtgggtggacgcaatcaagaagcgatactttcgactggacgcagagacagggaccg
acgccaagtcattcaactgggcctaccagcgaccacacaactcagaatggaatgtacatg
tttatcgaagcatcaagtccaagaaaactcggacacaaagcacaactcgtatccccactt
attacgccacaaactcattgcttgcatatgttctaccacatgtatgggagacagatcggc
acacttaccgttgcgcaaacgattggtggggtcagaaccaatctgattgaactgacagga
gagaaaggaaatctctggaattcactttctgttgaaattaactcaggatctgtgagaaaa
tcaagccgacgcagcgaccgagaggagcgacaatttattcgcagcgacgagaacacgaga
gaaaacccgactcaggatccagacttagacgtggcttcgacaaacacacagcacgactcg
atggttgttgggacaagacagacaggcttgttgcaagcacatccagatttgagggttatc
atcgaaggaactacgggccgaggatacgctggtgatattgccatagatgacgttgttatt
actgacggcccatgcgatgctacaccgagcgtagccccggtcgtgctcgcaaatgatttc
aattgtaacttcgatgtcgatatttgcgatatgatccagaacggtgataacttggacaac
tttgattggacgcgtaacagtggtccaacgggtagcgcagcaaccggtccatctaccgac
cacacgacgggcaacgagcagggttattacatgtacattgagtcgtcatcacctcgcatg
ggaaaccagattgctgagttgaccacccctaaaatgacaccacatcaatactgtgtgcga
tttttctctcacatgtggggttcggctaccggagccatgagggtattttctattgaagag
ttgcccggaacaagttctgattcacggttgagacaacttaatgttgttggcaaccaagga
gactcttggattgcacgcgaatttgacttcgtgcacaacaccaacgcactcaatgttaaa
tttgtcttccaaggaaaagttggtccaagtttcacgagcgatatagcgatggatgatttg
actattacaccgggaacctgtcaagctagctcttccacaacagctccaaccaccacaaca
accagaagaacaacaacaacaacacgaccgacaacgacgacaacaacaacaacaacaaga
ccaacaacaacaaccgcaaccacaataacaccaacgacgacaacaactacaacaactcaa
ccaacaaccacaactagattaacgagaaggtcaaccacaagttcatcaacaacaacaaca
accacaacagtagcacccaccaccaccacaactacgacaacagcaccaactacaaccaca
accacgactcccccacccactacaacaactccaacaacgacgactacaacaaccacaaca
ccagccactacgacaactcttgctccagtgaatattattcctacagactttgcgtgtgat
tttgatgcctcattggattgtgggatcactcaatccacaactgacgactttaactggatt
cgtcatcgtggtaaaacttctagcggaggaactggtcctttggcggatcatacttctggt
acaacatcaggctattatatgtacgtggaaggaagccgaccaagacgccgtaaccacgaa
gcaatcatatcaactccgtctcttggaatctccaaagcaaagcgatgtgtgactttctgg
taccacatgtggggtagtgggatgggtacactcgacgttacagcggagttcgcaacaccg
tccaggccaagtgtaagaacgaatggaggagcgttacctacgaatacaagttctgtgttc
cgaagacaaggaaaccaagatcgtaattggttatctgctcgtattacattggatcaacac
cagtcttacatgggcggatcagtggtgttgcatttccgtgcaatccgtggagacactttc
caaactgacttggccatcgacgacatttgtacatctgaaggaccatgcgactccaacaat
cgttgcaacgcagctgggaggttaatcgctaccacaacacgggcagttgcagccacaaca
acaaccacgacgcctgcgactaccaccacgggttcaacaacaacagtatcgaccacattc
ttggctacaacgactctagatcctttacttcgtctatgcgtcggcatgccactgtgcact
ttcgaaagtcgtcaaccaaacaatcaacgaccacgtacagcttctgtagcgccaccacct
ggacgaggagcatcacttgatcttggacctcacgatccacatgcaccatatgctaatgac
ctgatgtgcggttggaaacaacttgtacaacgagatcaattcaactggacaagacacagc
ggtgccactgtcagtagaggcactggtccaccaggagatcatacgactactagaggttat
tacatgtacatcgagacttctagtccaagaaaaatgaacgacaaagcattcttgcaaaca
tatctcatgtttgccactgactattgtctggacatctattacaacatgtatggggttttt
gctggaaggttatctgtacgttctgttcaaaggcttacaaatggtagaaccaccttgtcg
tatttgaagaatgtagctggtaaccagggtacacggtggaagaacatgaaagttcaatac
aggccgccacgtaacgcaagggaagtagctttcagattggaaggtgtcgttggaaaggat
tacagaggcgatattgcaattgatgatattgccatacacccaggacgatgcgatgcatgt
gcccgaccaagtcactcgtttaccaacaacttaaaccagcaacaatctttctccaccggc
tgtgcacatgccaggttgttttatgtgcgctgctgcagtctcacccaagaaaaggtggtg
tatagacgagttgataactgtgaccaagatatgtttagccctccgcgattaaactggttt
tgcaacaacatgtaa
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integrated database retrieval system
