Ciona intestinalis (yellow sea squirt): 100184170
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Entry
100184170 CDS
T01056
Name
(RefSeq) exostosin-like 3 isoform X1
KO
K02370
alpha-1,4-N-acetylglucosaminyltransferase EXTL3 [EC:
2.4.1.223
2.4.1.224
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin00534
Glycosaminoglycan biosynthesis - heparan sulfate / heparin
cin01100
Metabolic pathways
Module
cin_M00059
Glycosaminoglycan biosynthesis, heparan sulfate backbone
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
100184170
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cin01003
]
100184170
Enzymes [BR:
cin01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.223 glucuronosyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
100184170
2.4.1.224 glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase
100184170
Glycosyltransferases [BR:
cin01003
]
Glycan extension
O-Glycan
100184170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_64
Exostosin
Motif
Other DBs
NCBI-GeneID:
100184170
NCBI-ProteinID:
XP_002121020
Ensembl:
ENSCING00000007435
LinkDB
All DBs
Position
2:1313710..1324500
Genome browser
AA seq
950 aa
AA seq
DB search
MVLNHNKDLSWMKIAGANISTSCSNVGREFKRFLVSAKPSRLAFIFILILLLFHFITSHL
NSQLGQLYSKTDSSPDTSYRLRDLKHIDELKRIKRSISNELRNLESKRNRMQDEILLQQE
RHMSFEQTVKKAEAEVELLKRRIIQLKTEQKEVEKPKMAAPARLLASEESNIVLTPPTMH
YKCQMHNCFDYSRCSLTSQFPVYVYSENTGNSPFDVTSFVKESTRDAFSASHYLTNDPNT
ACLYIAVLGEVETIAGANAKPGISTDSISNWFRSLAYWRGDGRNHLLVYFSHHSTIQNPL
LGANTGRAIVAQTNFERNQFRTSFDIVVPFLPSVRTTIPPLPRDAESDFENKDFTNYDQK
LEDVLPHMIPAMREYTLSFQGQWATDYNQEADDGLPPRTDSEFHPLLMENINLMTESKIH
GTFFLQTQCSEERFVTPGYSSEWSLCGTASDRLSVLSRSTFVLLLPAEDHSVLLSTSIFM
TRLSEALQSGAIPVILGTHVLMPLHEFISWEKAAIILPQARVTELPFLLSNIPHPEVISL
RRQGRFLYETYLSSQAQVVESLLAVVRTRLQIPPIPVADVMSDVVPHSSYPVENHEVSPG
DAETEFGMPPVEEATSSPRFTRNYTSVTLDSHEMWNKIPGPFHLYPFTPNDRLLPTDAQF
IGSSNGFRPIGGGEGGTGKVYQESLGGNSQWEQFTIVMLTYKREEVLLQAVERLIGLPHL
NKIVVVWNSPEPPGPELHWPDIGASVVVVHPEKNSLNNRFVPWSEVETEAVLSIDDDAHL
RHDEILFGFRVWRESRDRVVGFPGRFHAWDPRSGGWAYNSNHTCELSMVLTGAAFFHKYY
MYLYTNWMPAAVRAIVDEYMNCEDIAMNFLVSHITRKPPVKVTSRWTFRCPGCPVALSQS
QEHFEERHRCINQFVKIFGYMPLVYTQFRVDSILFKTRLPHDKQKCFKFI
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggttttaaaccacaacaaagaccttagctggatgaaaatagctggcgcaaatatttca
acatcatgttcaaatgtcggacgagaatttaaaaggtttcttgtcagcgcaaaaccttca
agacttgcgtttattttcatcttaatattactactgtttcacttcattacaagccacctt
aattcacaacttggtcaactttattcgaagacggattcatcacctgacacttcgtacagg
ctgcgagatttaaaacacattgatgaattaaaaagaatcaaacgttcaatttcaaatgag
ttaagaaatttggaaagtaaaagaaatcgaatgcaggatgaaattttattgcaacaagaa
agacacatgtcgtttgaacaaactgttaaaaaagctgaagctgaagtggaattgttaaaa
agaagaattatacagttaaaaactgagcaaaaagaagttgagaagccaaagatggctgca
ccagctcgtctgctggcatcggaagaatctaatattgttcttacacctcctacgatgcat
tataaatgccaaatgcacaactgtttcgattattcaaggtgctcactcacttcccaattc
ccagtttacgtttattcagaaaatacaggaaattctccattcgacgtaacttcgtttgtc
aaagaatcaacaagagatgcattctctgcgagtcactatctcacaaatgacccaaacact
gcttgcttgtatatcgctgtgcttggtgaggtagaaacaattgctggtgcaaacgctaaa
ccggggatttcaactgattcaatctccaactggttcagatccctggcatactggcgtggt
gatggtagaaaccatctcctcgtgtatttctcgcaccattcaaccatccaaaacccactt
cttggtgcaaatactggtcgggcaattgtggcacaaactaactttgaaagaaaccagttc
cgaacaagctttgacattgtggttcctttccttccatctgttcgaacaaccattcctcct
ctaccacgtgatgcagagtctgattttgagaacaaagattttacaaattatgatcaaaag
ttagaagatgttttaccacacatgattccagctatgagagaatatactttatccttccaa
ggtcagtgggcaacagattacaaccaagaagctgatgacggcttacctccaagaactgac
agtgaattccacccactgttgatggagaatatcaatttaatgacagaatcaaaaattcat
ggaacttttttccttcaaactcaatgttcagaagaaagatttgtcactcctggttatagt
tcggaatggtctctctgtggcacggcaagtgatcgtctttctgttctctctcgatccacg
tttgtcctcctcctccctgcagaagatcactctgttcttctttcaacatccatctttatg
acgaggctctcagaagctcttcagtctggagcaatccccgtcatcctcgggactcatgtt
ctcatgccactccatgagtttatatcttgggagaaagctgcaataatcttaccacaggca
cgagtcacagagcttccgttccttctctccaacatcccacatccggaagtgatctccctc
cgaaggcaaggacgatttttgtacgaaacttacctctcaagtcaagcgcaagttgttgaa
tcactgctggctgttgttaggactcgactgcagattccaccaatacctgttgcagatgtt
atgagtgatgtggtgcctcactcaagttacccggttgaaaaccatgaagtatcgcctggt
gacgctgaaactgagttcggtatgcctcctgttgaggaagcaaccagttcaccaagattt
acacgaaactacacgtctgttacgcttgattcgcatgagatgtggaacaaaatacctgga
cccttccacctctatccatttactcccaatgatcgacttttaccaaccgacgcacagttt
ataggttccagcaatggatttcgtcccattgggggtggggaaggtggtacaggtaaggta
tatcaggaatcattaggtggcaactcacaatgggaacaattcactattgtaatgttgact
tacaaacgagaagaggttctactacaagcagtggaaaggttgatagggttgccgcattta
aacaaaattgtggtagtttggaattcccctgaacccccggggccagaacttcattggccc
gacattggggcatcggtcgtggtcgttcatccagagaaaaactcgcttaacaatcgattt
gttccatggtcggaggtagaaacagaggcggtcctctccattgatgacgacgctcatctt
cggcatgacgaaatattatttggattcagagtttggagagagtctcgtgatcgagtagtt
ggttttccgggtcgtttccacgcatgggatccaaggagtggaggctgggcttacaactcc
aaccacacatgtgaactatccatggttctcacgggagctgctttcttccataaatattac
atgtacttgtacacaaactggatgccggctgcagttcgtgcaatcgtggatgaatatatg
aactgtgaggatatcgccatgaacttccttgtttctcacatcacgagaaaacctccagta
aaggtgacatcacggtggacttttcgatgtccaggttgcccagtagcgctctcacagtca
caagaacactttgaagaaaggcatcgttgtatcaaccagtttgttaaaatctttggctac
atgccgctggtgtacacgcagtttcgagttgattctattctctttaaaactagactgcca
cacgataagcagaagtgctttaagttcatataa
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