Ciona intestinalis (yellow sea squirt): 100184298
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Entry
100184298 CDS
T01056
Name
(RefSeq) protein transport protein Sec24C
KO
K14007
protein transport protein SEC24
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100184298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100184298
Membrane trafficking [BR:
cin04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
100184298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Motif
Other DBs
NCBI-GeneID:
100184298
NCBI-ProteinID:
XP_002125572
Ensembl:
ENSCING00000003689
LinkDB
All DBs
Position
7:175103..184914
Genome browser
AA seq
1014 aa
AA seq
DB search
MQPPNYQYPPQGPMSMDPVYNQSNYPPHNSAVGGNVTYTHGGALQTSKHTPPATSGSIPS
QQPPVTSVNGYYNGHQYQSNNMYHSGPQMNPPPTSYNQPITSPPPLPSNTNSGMNNPPAS
GYQQNYQRPPTSEYPQQPGYPVSGAGEPPRPNEHSYSKPNQPPYQPIHQQMSNMSINNQN
QTFNQAPGSYMPPPSTPGYIPPPQTINPTQSYPQPGPPGAAGVARPPNYPNQPVTAPPKR
LDPDAMPSPIQVIQDDKINRGGEGFRTEGRGLVPPLVTTQFTVEDMGSVSPRYVRCTAYN
LPATADMAKNCQVPMSLCVKPLSALPEGESPPFIVDPGPDGPIRCKRCKAYMCPQFTFTD
GGRRFQCVLCNAITDTPHSYFDHLDHMNHRVDKYRRPELCRGSYEFIATKDYCRNDKFPL
SPAFIFAIDVSYNAMKSGYVDLLCRQLHTLLDTLPKEAHQEKSSIRVGFITYNNVLHFYN
LKSSLAQPQMMVVSDVNDVFVPLQDGFLVDLDQSRHVIDSLLDQIPDMFRDTRETELVFA
PVIQAVVQALKSAECAGKLFMFHTSLPIGEAPGKLKNRDDRKLIATDKEKVLFNPASNFY
EKLAKDCVAQACCVDLFLFPNQYVDVATLSQVPQYTGGQVYKYNFFRSDIDGSRFIKDFA
HDLQRDIVFDAIMRVRTSTGIRAVQFYGSLYMGNTTDVELAAIDCDKAIQVELKHDDKIA
EEYGAYVQIALLYTSVSGQRRLRLHNLNLSVCTQLADLYRSCETDVLMNYLAKKAVVSAL
QSSSAKLREELINQISVTLATYRKHVASPSSPGQLILPECMKLLPVYLNCLLKNDAIHSS
HDVTTDDRAYLRHLIISMDVSDTQTFLYPRLIPVFGETVSIEGLPPAIRCSEERMKENEA
YLLENAVSLFLWIGQSVDPAWIQNVFGVQSAAQIDIDLVNLVVYDNEDSRKLRDLVAKLQ
ASRNRQMKFTIVRQRDKLEPWFKHLLAEDRGAGGATSYVDFLCHMHKEIRALLN
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctccaaattatcagtatccaccccagggcccaatgtccatggatcctgtgtac
aatcaatccaactatccaccacataattctgctgttggtggaaatgttacttatactcat
ggtggtgctttacaaacaagtaaacataccccaccagctacaagtggaagcataccaagc
caacaaccacccgtaacatcggtaaatggatattataatggccatcaatatcaaagcaac
aatatgtatcattctggaccacaaatgaatccaccccctacttcatacaaccaaccaata
acgtcaccaccaccattaccaagtaatacaaactctggaatgaacaatcccccagcaagt
gggtatcaacaaaactatcaacgtccaccaacttcagaatatccccaacaacctggttat
cctgtatctggtgctggagaaccccctcggccaaacgaacattcatattccaaaccaaac
caacccccgtaccaacctattcatcaacaaatgtcaaacatgagtattaacaaccaaaac
caaacctttaaccaggcacctggatcttacatgccacccccaagcactcctggttacata
cctccaccacaaacaattaacccaacacaatcttatccacaacctggaccaccaggagca
gcaggggttgcaaggccacctaattaccccaaccaaccagtgactgcaccaccaaaaaga
cttgaccctgatgccatgccaagccccatacaagttatacaagatgataaaataaaccgt
ggaggggaagggttccgcacagaaggcagaggcttggtacctccattggtgaccactcag
ttcactgtagaagatatggggagtgtcagcccaaggtatgttcggtgtacagcatacaat
ctaccagcaactgccgatatggccaagaattgtcaagtaccaatgagtttatgtgtgaag
ccattatcagctttacctgagggtgaatctccaccatttatagttgacccgggccctgat
ggtccaattcgatgcaaacgatgcaaggcatacatgtgcccacagtttacattcactgat
ggtggaagaaggtttcagtgtgtcctgtgtaatgcaatcacagataccccacatagttat
tttgatcacctcgaccacatgaaccatcgtgtggataaatatagaaggcccgagttgtgc
cgaggttcgtatgaattcatcgcaacaaaagattattgtcggaatgataagtttccactt
tccccggcctttatatttgccattgatgtttcatacaacgcaatgaagtctggttatgtt
gaccttctgtgccgacaactccatacattgcttgatactctacctaaagaagcacatcaa
gagaaatcctcaattagagttggtttcatcacttataacaatgtcttgcatttctataat
ttgaagagttccctggcacaaccacagatgatggtagtatcagatgttaatgatgtgttc
gttccattacaagatggattccttgttgatcttgatcaatctaggcatgtgatagacagt
ttgttggatcaaatacctgacatgtttcgtgacactcgggaaactgagcttgtgtttgct
ccggtcattcaagctgttgtgcaagcactcaagtcggcagaatgtgctgggaagttgttc
atgttccataccagtctcccaataggggaagcacctggaaaactcaaaaatcgtgatgat
cggaaattaattgcaacagacaaagaaaaggttttattcaaccctgcaagcaacttctat
gagaaacttgcaaaggattgtgttgctcaagcttgctgtgtggatttgttcttatttcct
aaccaatatgtggatgtagcaaccttatcgcaagtcccacaatatacagggggacaggtg
tacaaatacaacttcttccgatctgacatcgatggttctcgtttcatcaaagattttgct
catgaccttcaacgtgacattgtgttcgatgcaatcatgcgtgtgagaacaagcaccggt
atccgcgctgtccagttctatggttccttatacatgggtaacaccacagatgttgaattg
gccgccatagattgcgataaagccatccaagttgagttgaaacacgatgataaaatagct
gaggaatatggggcgtacgtgcagattgctctgttgtacacatcagtgagtggacagcgt
cgacttcgtttacataatctaaacttgagtgtatgtacccagcttgctgatttatacaga
tcttgtgaaacggatgttttgatgaattatcttgctaagaaagcggttgtatctgctcta
caatcttcatctgcaaaactacgggaagagttgattaaccagatatcggtgacacttgcc
acgtatcgtaaacatgtggcttcaccctcgtcaccgggacaacttatcctaccagagtgc
atgaagttgttgcctgtgtacttgaactgtttattgaagaacgatgccatccattcgtca
catgacgtcaccactgatgatcgagcttatttgcgccaccttattatttccatggatgtt
tcggacacacaaacatttttgtatccacgtcttataccagtgttcggtgaaactgtctcg
attgagggacttccccctgctatccgttgttctgaagagcgaatgaaggagaatgaagct
tatctgcttgagaatgcagttagtttgtttctatggatcggacaatctgttgatccagcc
tggatacaaaatgtcttcggtgtccaaagtgcggcacagattgatattgacttggtcaac
cttgttgtttatgataatgaagattcaagaaaacttcgtgatctggttgctaagttacaa
gcatcacgaaatcgtcaaatgaagttcactattgtacgacaacgagataaattggagcca
tggtttaaacatttgttggcagaagaccgtggagctggtggtgctacttcatatgtggat
ttcttatgtcatatgcacaaagaaatacgagctttgctgaactag
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