Ciona intestinalis (yellow sea squirt): 101242523
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Entry
101242523 CDS
T01056
Name
(RefSeq) E3 ubiquitin-protein ligase RNF220-like isoform X1
KO
K25174
E3 ubiquitin-protein ligase RNF220 [EC:
2.3.2.27
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
101242523
Enzymes [BR:
cin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101242523
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101242523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF220
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-RING_2
zf-RING_10
PRP21_like_P
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
101242523
NCBI-ProteinID:
XP_018668621
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All DBs
Position
8:2315584..2328731
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AA seq
710 aa
AA seq
DB search
MSGADKFPYSRQFHGDFRYFGHSSSRHPQPPVPAPSAAATVPPPAHPFIAHFYPMLAGTE
CPNPGYPSAINPTPHQTSAAALVALAGQNFSSQLLQNFQLKAFREQLSVKEDAENQAASS
KPIRQQFDVESLTGKSPTQDLPSNQLTLQGASATPDVFPSPLHAWQQLLRRFRGNESPPD
PIADPYPSYIKGSYQHHPPNQHREIQRNFAGPPDSLFRRDSMEMPPSYDQLKRKRPGVHL
SRSVAKSPRSAHPERHNDINPVDFSRRSPTSTLNETATNALRISNSNNTLNGRHTDHVDI
LTSSPTGSSPSREHQDYDTMLLTNRNTSSVSSNQSQDDVPRRRKKRSSSVSDLCPVCGLT
VRESELTAHVQMEIEKLAKLPNDIRKKAFCHRKSSFERKPSFTSSSSCNATSTSSKRLTE
RDSSPKSERDNREKTFRKVRSNRVDRLNSRVGNCLKAQRSTGETSNENRVWIGHSGATMC
PVCSTAMHGSSAEMSAHVEQCIRQRQQSRHPHDEEEEVDVENDPPRAPSNHDDTRSNQSF
SSDCDWRNETRSNVPRVPGSNLQDGSFPLNRTSQQSEQVLNVETDDTYLFGLPQFSEADV
TSCSVTSHEATRSATESPDDSVCSTPPSTGHEESCSNDVASLHLKIKKLINDKRSNRCQI
CMDSYEDPLASIECWHVHCRKCWLRALSVKKLCPQCSAITPADKLRRVYL
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtgcggacaaattcccgtatagccgtcagttccacggtgatttcagatacttc
ggacattcctcttcccggcacccccaacctccggttcctgctccatcagcagcggcgacg
gttcctccgccagcgcatccgttcatcgcgcatttttacccgatgctggccggcaccgag
tgcccgaatcccggctacccaagtgcaatcaacccgaccccccaccagacttcagcagcg
gccctggttgcccttgctggacaaaatttctcgtctcaacttttgcaaaatttccaactt
aaagcatttagagagcaactctcagttaaggaagacgcggaaaatcaagcagcttcgtcg
aaaccaatacgacaacagttcgacgtcgagtcacttacaggcaaaagtccaacgcaggac
cttcccagtaatcaactcacattacaaggtgcttcagcaacacctgacgttttcccttcc
cctctgcacgcctggcagcaactgctccgcaggttccgcggaaacgagtctcctccggat
ccaatagcggacccatatccatcttacatcaagggatcataccagcaccatccgcccaac
caacatcgggaaattcagcgaaacttcgcgggccctcccgactcacttttccggcgagac
tcaatggaaatgcctccttcgtacgaccaacttaagcgaaagcgtcctggcgttcattta
agccgaagcgtggccaaatcaccgagatctgcacatccggaaagacacaacgatataaac
ccggtcgacttcagccgtcgatcacctacatcaaccctcaacgaaacggcaactaatgca
ttgagaatctcaaactcaaataacacgttaaacggacgtcacacagatcacgtggatatt
ctgacgtcatcacctaccggatcgtcaccgtcacgtgagcaccaggattacgacactatg
ctcttaaccaatagaaacacttctagcgtttcttccaaccaatcacaagacgacgtccca
cgccgacgaaaaaaacgatcatcgtcagtcagtgacttgtgtcctgtatgtggactcact
gtaagggagtcggagctaacagcacatgttcaaatggagattgaaaaacttgccaagcta
cccaatgatattcggaaaaaagctttctgtcatagaaaatcatcttttgaacgaaaacct
tcatttacttcttcgtcatcatgcaatgccacctctacttcaagcaagcgattaactgaa
agagattcgtcgccgaaatcggagcgagataacagggaaaagacatttcgtaaagttcgt
agcaaccgagttgatcgtctcaactcacgcgttggtaactgcttgaaagcgcaacggagc
acaggggagacgtcgaatgaaaatcgagtttggattgggcactctggcgccactatgtgt
ccagtttgctcaacggccatgcacggcagttcagccgaaatgagtgcacatgttgaacag
tgtattagacagagacagcagtcccgccatcctcatgatgaagaggaagaagtagatgtt
gaaaatgatcctccacgagctccaagcaaccatgacgacacaagaagcaatcagagcttc
agttccgactgtgattggaggaatgagactcgatctaatgtgccaagggtgccgggttcg
aatcttcaagatgggagttttccgttaaatcgaacttcacagcaatctgaacaggtactg
aacgttgaaacagacgatacttatctttttggtttacctcaattttccgaagcggatgtt
acgtcatgtagtgtgacgtcacatgaagcaacgcgatcagcaacagaaagccctgacgac
tcggtttgctccacaccgccatctaccggacacgaagaatcttgttctaacgacgtagca
tcacttcatctcaaaatcaagaaactgatcaatgataaacgatccaaccgttgtcagata
tgtatggattcatacgaagacccgttggcctccattgaatgttggcatgtacattgtcgc
aaatgttggcttcgtgcattgtctgtgaagaagctttgtccgcaatgcagcgctataaca
ccggcggacaaattgcgccgtgtatatttgtag
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