Ciona intestinalis (yellow sea squirt): 101242641
Help
Entry
101242641 CDS
T01056
Name
(RefSeq) SCO-spondin-like
Organism
cin
Ciona intestinalis (yellow sea squirt)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWD
C8
TIL
VWC
Pacifastin_I
Motif
Other DBs
NCBI-GeneID:
101242641
NCBI-ProteinID:
XP_026695015
LinkDB
All DBs
Position
Unknown
AA seq
1810 aa
AA seq
DB search
MGYSGDRCELGTGDAEPIVDIISPTSNQDEASCSTWSADHYTTFDGKHFDFPGTSCTYDL
AYDISGFFHVQVVNNFECHGTLCKRAVRIEIGSTDTIMLYPNATATYQGNLLPVPSAVAG
ISLRKAGVYTIAQFGSQVRVLFDNQNSIFIGVPASYKTNMRGLCGNYDHDPNNDLMLESG
KIVTPIEFGNAFHVSDNCLKVSLDQSLPCSKFNDTTQMELEKICSSLSNQQFSECHGVVN
PGNFLEICKTDVCKVGPEAAAEKACEIFTHYSRTCSNYHLDLKWRSSELCNIECPNNKVY
MECGSPCEQTCDNVGFQHSCDIDICVDGCFCPTGTYYERETGMCLTKAECPCKRGGVPYQ
PGESVQHDCNTCVCGNGRWNCTTNACPAECQVLGEDQYKTFDGTIYGFSGGCEYVLAKAE
NTYLGDFTILIQNSGCGFADTTACQKTLTVNLMKGEVITILGHGRVKIGETVVSLPYSNT
YVGYTIRKITTISLQLVIYNEIRLTWDVDNGIYIEVPPAYRESIRGLCGTYNLKKYDDLM
LPSGMITQSRTEFGNGWKTTPHCNVDEPSVGMDMDIDACDLGFNYHSQATQLCSVLKTNP
FSLCNLVVDPIPYIEGCKHHVCHCLHKFVSSDSCECGMLSAYARACGRAGTPVPSVPSWR
DTYGCPANCEGGRVFMECTGRSCETTCQMFSEGSIDKKCPKIKECHPGCVCPEGQYLDTR
RNTCVKVAECPCYFNEVAYEPMSSRQEVCDMCNCNNGAWSCAPIPDCTLENVCQEGQAWS
NCTKCERTCENMHTACVPNHCHSGCACLAGTVKEHGSCIPPGDCPCHHHGVSYPEGSSIN
QDCNKCTCHQTKWVCSRQDCSSTCTVYGEPHVLSFDKRRFKFFGSCSYVLAEDICEDGVG
SFSIVMENIHCETGNVVCAKSLRISIHDKVIELVRGSEPKVMRNTWALPGTPKADFLIQK
SGLFIIISTKIGLKIRWDHGTELSIQLDPQFQGKVCGLCGNYDGNVHNDFKTRQGEITDL
AHLFGDSWKVFDSCPSSEPTQAHPCQIYPERAAWSRYKCRAILNEPFTKCHSVVSPQEYF
LDCVFDSCKCHAGGDCECLCTAIAAYARACSDRQVYIKWRTQETCGLQCEEGLHYSPNGT
TCNNGCPSSNCDSMLVEGCHCPEGLVYLDGKCVSSVPCPCNYNGTVIQSGNSYVDECKNC
TCHNGSISCDQTSCTTAVTSTTSSFTTSVATPPFVTTPFSSVETTRGLNFSETSTAVITY
TPPADETVSTTPQSSTTFETTTAKVTTSRGSTSISSGTSPGGSTTVSFGTSAVGSTAVSS
GTSAVGSTTVSSGTSTGGTSTVSSGTSPGESSTVSSGTSPVESTTVSSGTSAVGSTTVSS
GTSTEGSTTVSSGTSPVGSSTVSSGTSTVGSTTVSSGTSAVGSTTVSSGTSAVGSTTVSS
GTSTGGTSTVSSGTSPGESSTVSSGTSPGGSSTVSSGTPTGGTSTGGTSTHYCILWYINW
RNLYCIIWYISCRNLYCIIWYTNWWNLYWRNLYCIPWYITWRKHTTESSGTPPGGTSTVS
SGTSPVGSTTVSSGTSAVGSTTVSSGTSAVGSTTVSSGTSAVGTSTVSSGTLTVTETVTN
ATVIPPSSTVVTITTFSPPPTPPTTSCLHNGTDYTLLGNTTWEEGGCRNCMCVDGEAQCG
KVCHVTCGENEELLDDADSDECCRCAPKQQEEEQEEEEDKCKPVNIEIQLNVSGCVSPPV
NLTSCSGQCVSGVEVISEPPFLSQKCNCCQPKSVVSKSVTLICPGGKEREQLVPFIQSCS
CLACGGEPIF
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggggtattctggggacaggtgtgaacttggaactggtgatgcggaaccaattgtggat
attatttccccaacttcaaatcaagatgaggcttcctgttcaacttggagcgctgaccac
tatactacatttgatggaaagcattttgacttccctggaactagttgcacttatgatctt
gcttacgacatttccggtttcttccatgtccaggttgtgaataactttgaatgccatgga
acgctttgcaaaagagctgttcggattgagattgggtcaactgataccatcatgctttat
cccaacgccacggctacataccaaggaaatttacttcccgtgccaagcgcagtggctggt
atctcccttagaaaagctggtgtatacacaattgcacaatttggatcccaagttcgagtt
ttatttgacaatcaaaactccatctttattggggtgcctgcttcgtacaaaacaaacatg
cgaggattatgcggtaattatgaccacgatcccaataacgatctaatgttggaaagtggg
aagattgtgacacctatcgagtttggaaatgcatttcacgtcagtgacaattgtttaaaa
gtttcacttgatcaatcattgccatgttcgaaattcaatgataccacccagatggagttg
gaaaagatatgcagttccttgagcaatcagcaattttccgaatgtcatggtgttgtgaac
ccagggaacttcctagaaatttgcaaaactgatgtttgtaaagttggaccagaagccgct
gctgaaaaggcatgcgagatattcactcactattctcgtacttgttcaaattaccatcta
gatcttaaatggagatcttcagaattatgcaacatcgaatgtcctaacaataaggtttac
atggaatgtgggtctccttgtgaacagacgtgtgataatgtagggttccagcattcatgt
gatattgatatctgcgtggacggttgcttttgcccaactggtacatactatgaacgagag
acaggaatgtgcttaactaaagctgaatgcccttgcaagagaggtggagttccatatcag
cctggagaaagtgtccaacatgattgcaacacatgtgtatgtggcaacgggagatggaac
tgcacaactaatgcatgccccgctgaatgccaagtgcttggagaagaccagtacaaaaca
tttgatgggacaatatacgggttctcaggaggctgcgaatatgttcttgcaaaagctgaa
aatacctacttgggtgattttacgattttgattcagaactcaggctgtgggtttgcggac
acaacggcttgtcaaaagaccctcacggttaaccttatgaaaggagaagttataacaata
cttgggcatggacgagtaaaaattggagaaacagtagtgtctctgccatacagcaacact
tatgtgggctacactataagaaaaattacgactatctctctccaacttgttatatacaat
gagatccgtttgacttgggatgttgacaacgggatttatattgaagttccaccagcttat
cgagagtctattagggggttatgtggtacttacaacttgaaaaaatatgatgatctgatg
ctaccttcggggatgataacacaaagcagaacagagttcggtaatggctggaagacgacc
ccacattgtaacgttgatgagccttcagtaggcatggatatggatattgatgcgtgtgat
ttaggatttaattaccacagccaggcaacacaactgtgtagcgtcttgaaaacaaacccg
ttttccttgtgtaatttggttgtggatcctattccttacatagaagggtgtaaacatcat
gtctgtcactgcctgcacaagtttgtaagctctgactcttgcgaatgtggtatgctgagt
gcatatgctcgtgcgtgcggtcgagctggtacaccagtgccatctgtgccatcatggaga
gacacatatggttgtccagcgaactgcgaaggaggccgagtatttatggaatgcacggga
agatcttgtgaaaccacttgtcaaatgttcagtgaaggctccattgacaaaaaatgcccc
aagattaaagagtgtcaccctggttgtgtttgcccagaaggccaataccttgatactcgc
cgcaatacttgtgtcaaagtagctgaatgtccttgttattttaatgaagtggcatacgag
ccaatgtcatctcgccaagaagtttgtgatatgtgtaattgcaacaatggtgcatggtca
tgcgctcctataccagactgtacgttggagaatgtctgccaagagggccaagcatggagt
aattgtaccaagtgtgaaaggacgtgtgaaaacatgcacactgcttgtgtgccaaatcac
tgtcattctggatgcgcatgtctggctggaactgtaaaagaacatggttcgtgtattcct
ccaggagattgcccatgccatcaccatggtgtcagttacccagaaggttcctccatcaac
caagactgcaataaatgcacctgtcaccagacaaagtgggtttgttcaaggcaggattgt
tcatctacttgcacagtgtacggtgaacctcatgtcctcagtttcgacaaacgtagattc
aagttttttggttcttgtagttacgtgttggctgaggacatatgcgaagacggtgtggga
tcctttagcatagtgatggagaatattcattgtgaaactggaaatgtggtttgtgctaag
tcattacggatttcaattcatgataaagtgattgaattggttcgtggatctgaacccaaa
gtaatgagaaacacgtgggctttgcctggaaccccaaaggctgattttttaattcagaaa
tcaggactctttataattatttcaacaaagattgggctcaaaataagatgggaccatggt
acagagttatctatacaactagatccgcagttccagggaaaagtttgtggtttatgcgga
aactatgatgggaacgttcacaatgactttaaaactagacaaggtgagattaccgacctt
gcccatttgttcggagatagttggaaagtgtttgatagctgcccctcctctgagccaaca
caggcccatccatgccagatttatcctgaaagagcagcatggtccagatacaaatgtaga
gccattctaaatgagccattcaccaagtgtcattcagtcgtatccccacaggaatacttt
ttggattgtgtcttcgactcttgcaaatgtcacgccgggggtgattgcgagtgtctgtgt
acagccatagcagcatacgcaagagcctgcagtgaccgacaagtttatatcaagtggaga
actcaagagacctgtggtttacaatgtgaagaaggactacactacagtccaaatggtaca
acatgcaacaatggatgcccgagttcaaactgtgattccatgttagtggaaggttgccat
tgtccagagggtttagtttatttagatggtaaatgtgtttcttctgttccctgcccatgc
aactacaatggcactgtcatccaatcaggaaatagttatgtggatgaatgcaagaattgt
acttgccataacggatcaataagttgcgaccaaacatcgtgcacgacagctgtcacctca
actacttcatcatttacgacttcagttgccacgccaccatttgttacaacccccttcagc
tctgttgaaactacaagaggtttaaacttttcagagacttcaactgcggtaataacctac
acaccaccagctgatgaaacagtatctaccacaccacaatcttcaaccacatttgaaaca
acaacagccaaagttacaacttctcgaggaagcacctctatatcatctggtacatcacct
gggggaagcactactgtatcatttggtacatcagctgtagggagcactgctgtatcatct
ggtacatcagctgtaggaagcactactgtatcatctggtacatcaactgggggaacctct
actgtatcatctggtacatcacctggagaaagctctactgtatcatctggtacatcacct
gtagaaagcactactgtatcatctggtacatcagctgtaggaagcactactgtatcatct
ggtacatcaactgaaggaagcactactgtatcatctggtacatcacctgtaggaagctct
actgtatcatctggtacatcaactgtaggaagcactactgtatcatctggtacatcagct
gtagggagcactactgtatcatctggtacatcagctgtaggaagcactactgtatcatct
ggtacatcaactgggggaacctctactgtatcatctggtacatcacctggagaaagctct
actgtatcatctggtacatcacctggaggaagctctactgtatcatctggtacaccaact
ggtggaacctctactggaggaacctctactcactactgtatcttatggtacatcaactgg
aggaacctctactgtatcatctggtacatcagctgtaggaacctctactgtatcatctgg
tacaccaactggtggaacctctactggaggaacctctactgtatcccctggtacatcacc
tggaggaagcacactactgaatcatctggtacaccacctgggggaacctctactgtatca
tctggtacatcacctgtaggaagcactactgtatcatctggtacatcagctgtaggaagc
actactgtatcatccggtacatcagctgtaggaagcactactgtatcatccggtacatca
gctgtaggaacctctactgtatcatctggtacattaactgtaacagaaaccgtgacgaat
gccacagtcatcccaccttcgagcacagttgtgaccataacaacattttctccacccccc
acaccacccaccacaagttgtttgcataatggcactgactatacccttcttggaaacacg
acttgggaagaaggaggatgtagaaattgcatgtgtgttgatggtgaagctcagtgtggc
aaagtttgtcatgtgacctgtggcgaaaatgaagaacttctggatgatgcagattctgat
gaatgctgtcggtgcgctcccaaacaacaagaagaagaacaagaagaagaagaagataaa
tgcaaaccagtaaacattgaaattcaacttaatgttagtggttgtgtgagccctccagtc
aacctcacatcatgcagcgggcagtgtgtatccggtgtagaagttatatcagagccgcca
tttttatcgcaaaagtgtaactgttgtcaacccaaatcagttgtgagcaagtctgttaca
cttatatgccctggtggtaaagaaagagaacaacttgtcccgttcattcagtcttgttca
tgcttggcttgtggaggcgaacccatattttaa
DBGET
integrated database retrieval system