Ciona intestinalis (yellow sea squirt): 101243241
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Entry
101243241 CDS
T01056
Name
(RefSeq) histone-lysine N-methyltransferase SETD1B-A isoform X1
KO
K11422
[histone H3]-lysine4 N-trimethyltransferase SETD1 [EC:
2.1.1.354
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin00310
Lysine degradation
cin01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
101243241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cin03036
]
101243241
Enzymes [BR:
cin01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.354 [histone H3]-lysine4 N-trimethyltransferase
101243241
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
101243241
HMT complexes
COMPASS/SET1 complex
101243241
COMPASS/SET1 complex (yeast)
101243241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
N-SET
SET
RRM_1
Motif
Other DBs
NCBI-GeneID:
101243241
NCBI-ProteinID:
XP_026690139
LinkDB
All DBs
Position
4:complement(440512..462313)
Genome browser
AA seq
1915 aa
AA seq
DB search
MKKQQPAAAFRGNFKVIVDPQLKKGQEKLVRFNGTEYSCENHGQAPVAVRDPRARVSRLW
SRKERIDLPVPRYKVDENYTGDVPPREVTFSKLNDNITKQFMEQMCSKYGKLERVRVYHH
PKTNKHMGLAKVVFASIKSASMCISNLHQTSIMGNIINAEIDSKGELLKHLFNKIIRGEI
LAETMPDVIRHTQEKPITRPVPVKDRRKSSQEDPRRRSSSDRKSSMEQTTSSHGPKTPPS
TLIDGKPNDNKQDLLNMEGARVPMHSNTKSSDNESGVSDEATRQHQNPRVNKRKVKKKKK
SRKYSRNSDSDTEMEKGKKGLPMWSTELEQRIENLLSEQNRKYNLDSTSRSSSHEFKSTS
STKSSDRKYSEQSGTDNDHSETAEESDVFDQASMSNHNHVETAELIDLEDGECSGDAEEV
HNGRSRKQSPVIQVMERAQHETSPDTKSERVSYSPSVVNSVNENSYHDNSPNQFPPSQSP
HRIVGRSIPTDSINYERRHEDRRRPPSPIELRSRSPFPQERYRHGGRSPEYIDRHHFDRY
PPRHRSPSFEHRHRRSPPPFELHRPRGRSPNFDHRGFHHGGYRGRMGSPGYMRPSDFPPG
HPEFNRRRSPSPGFSRRRRSISPVHPRYGIRREFEMSPRRDRYRRTPPDIGRHRREPSPR
FAEYDRHRRRSPGFHRDHHYHPPSSPDSRRQRDKRELPPEFQERWSRNRSQSPHHSHFRR
DTSPRHDSHMRRSRSNSRNCSRPRSRSPKLTDDRPYSPGDFAVEDNIESDVAIHTSVSTD
AVESYSDSANHKKGRRKNNDSSDVGELQQISLDERLREMTGEAPDDGTPPHSPLLTEAEV
PVSDNHQEDIPDGSDDMEISSGGSTHSPHLQEKQNFHPNQQSWQYNQQEMWNGFDPRFHL
PNQQPMWCPPAQRFPHNVPNGFIRPFMPDCPIDMKILPPPPPGWNNRPWVQGQPGVPHMS
HMPPPFLPPLMQGLNQMDNTAVDNAFAHCALNKVAAELKEIMKKDLNRKVIESMAFKVYE
AWWDEQYALKNPKPAALKKTTVHQNQASLKTESNINTEQPVVDKVKAESKPAGKLPALLN
TFDPLNWAKGSMEMDGFRIGLGLRSAISKMPSFRVKKPTPSFDEKSKLIGDKSKAETKSE
QEVQRRKRIRQTLDSEGEEDDESDYSDVDDKKTKIIGRLDVDEVFSTSSSSQSSEDEDDD
QESSEEESDEGSDEDVEPLIGVKRTIHDDVRSEPPKKKKKDNIDEVKIEAEVSKPTNRSD
DVIKAASMLSELQSGKSLLPPSAPANIVTSQTLKHVHPKKRFRLISTDASGHEISERLRS
DDELSAMSDKEKAALEVLTDMKSTPERRMSTVNRLSSSDSSDQPILPTTPGRQHSEVTSV
FSPPLTPAPSSRSIFSHDTHPSSDMRIPITPGSDTNLSDRKKSDSKELEAVQALLSIKES
QPPIPPLSPPTPVSTKHQPLKKRADLRLTIPPKRSTSVLTQEDKDRMTALAEEHNYFATS
PRVKPTSSHIHPSLLQILEEHNYSCPPSQAPKTPLKKSQDEAPFLHNDVISTSESPASAA
ELVKLRHGDSKMYKKIKQRTDQLYYEEKIKRSLVGRFRERTHMDDMRMMYNIWDRGLDVE
DMKYLRQEYEDMLANPGTGGWVNDTHWVPHPATYFPDENDALTTSPDKRNKRKRRQARKD
DISDIKPHKTGCARSEGFYKVNDNTKLIQRKLMYRQADNTPQPKGRSKYANESASTSGVA
TEKSRETRHMMRRIASEFGSDASDLLKYNQLMYRKKSVKFKRSHIHGWGLFAEETIGADE
MVIEYVGQLVRSLIADRREVDYTRRGIGSSYLFRIDSDHIIDATKCGNFARFMNHSCNPS
CYAKVIAVDGAKKIVIYSKDTIKPTDEITYDYKFPIEDVKIPCFCGAPNCRGTLN
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagcaacaacctgcagccgcatttcgtggtaatttcaaagtaatagttgatccc
caactaaaaaaaggacaggaaaagttggttcggtttaatggaacagaatacagctgtgag
aaccatggacaagcacctgttgctgttcgtgatccacgtgcaagagtatcaagattatgg
agtcgaaaagaaagaattgatcttcctgtaccaagatataaggtggatgagaactacact
ggtgatgtaccaccaagagaagtaaccttttcaaaattaaacgataatatcaccaaacag
ttcatggaacaaatgtgttctaagtatggaaaacttgaaagagtacgtgtataccatcat
cccaaaacgaacaagcacatgggacttgcaaaggttgtttttgcttccatcaagtctgca
tccatgtgtatatctaatctgcaccaaacttcaataatgggaaatattattaatgccgaa
attgacagtaaaggtgaactgttaaaacatcttttcaataaaataattcgtggagaaata
ttggctgagacgatgccagatgtaattcgacacacacaagaaaaaccaatcactcggcca
gtacctgttaaagacagaaggaaatcatctcaagaagatccaagacgaaggtcatcaagt
gataggaagtcctccatggagcaaacaacatccagtcacggtccaaagactcctccatct
actcttattgatggaaagcccaatgataacaaacaagacttgctaaacatggagggtgca
agagttccaatgcattcaaataccaaatcatcggataatgaaagtggggtttctgatgaa
gctaccagacagcaccaaaatccccgggtaaacaaacgtaaagttaagaaaaagaaaaag
tctaggaaatatagcaggaactctgatagtgatactgaaatggaaaaaggtaaaaaagga
ttacccatgtggtccactgaattggaacaacgtattgaaaatttattatccgaacaaaat
cgtaagtacaaccttgatagtacaagtcggtcgtcgagccatgaatttaaaagtacaagc
agcacaaaatctagtgatcggaagtacagtgaacaatcagggactgataatgatcattca
gaaacagctgaggaaagtgatgttttcgatcaagcttccatgtcaaaccacaaccatgta
gaaacagctgaacttattgatttggaggatggtgagtgctccggtgatgcagaagaagtc
cacaatggaagatcaaggaaacaatctccagtcatacaagtgatggaaagagcgcaacat
gaaacttctcctgatacgaaatctgaacgcgtttcttattccccttctgtggttaactct
gtaaatgaaaattcataccacgataactcccccaatcaatttcctccaagtcagtcaccc
cacagaatagtaggtagaagtataccaacagactcaataaactatgaaagacgacatgaa
gatcgtcggagaccgcccagtccaattgagttaagatcacgcagtcctttcccccaagaa
aggtatcggcacggtggtcgaagtccagaatacattgatagacaccactttgaccgttat
ccaccaagacaccgaagcccatcctttgaacatcgacaccggagaagtccgccacctttt
gaacttcatcgaccaaggggtcgtagtccaaactttgatcaccgcggtttccaccacggg
ggttatagaggaagaatgggaagtcctggttatatgcgaccatcagattttccacctggg
catcctgagttcaacagaagaaggagtccaagtccagggtttagtcgtagaagaagaagt
atctcccccgtccatccaaggtatgggattcgtagggagtttgaaatgagtccccgtcga
gataggtaccgacgaacaccaccagatatcggtcgccatcgtcgcgaacctagtcctcgt
tttgctgagtatgatcgtcatagaagaagaagtcctggcttccatagagatcatcattac
catcctccctcgagcccggactctcgaaggcaacgagataaacgggaacttccgccagaa
tttcaggaaagatggtcaagaaaccgttcccaaagtcctcaccattcacacttcagacga
gacacttcacccaggcacgatagtcacatgagaagatcgagatccaattctagaaattgc
tcaagaccccgatctcgttccccaaaactcacagatgatcgaccttactcacctggtgac
tttgctgttgaagataatattgaatctgatgttgctattcatacttctgtatctactgat
gcagttgaatcttatagtgattctgcaaatcataagaaaggacgacgcaaaaacaatgat
tcatctgatgttggtgaactacagcaaatatcactggatgaaaggttaagagagatgacc
ggggaagcccctgatgatgggacacctccacactccccattattaactgaagcagaggtt
ccagtgtctgataatcatcaggaagacataccggatggttcggacgatatggaaatatct
tcaggtggtagcacacactcacctcacttacaggagaaacaaaactttcatccaaaccag
caatcatggcagtataatcaacaagaaatgtggaatggttttgatcctagatttcatctt
cccaaccaacaaccaatgtggtgtcctccagcacaaaggtttccacataatgttccaaat
ggttttattcgacctttcatgccagattgtccgattgacatgaaaatattaccaccccca
ccccctggttggaacaacagaccatgggtgcagggtcaacctggtgtcccacatatgtca
cacatgccacctcccttcttaccaccattaatgcaaggtttgaatcaaatggataacaca
gcagttgacaatgcattcgcacactgtgctttaaacaaagtggctgcagaactaaaggaa
atcatgaaaaaggacttgaatcggaaagttattgaatcaatggcattcaaagtgtatgaa
gcatggtgggacgaacagtatgcactcaaaaacccaaaaccggcggctctaaaaaagaca
actgtccatcaaaaccaagcaagtttaaaaactgaatcaaatatcaacacagaacaacca
gtagttgataaagttaaagctgaaagcaaacctgctggtaaattgccagctttgcttaac
acatttgatccacttaattgggctaaaggttcaatggaaatggatggatttcgaattggt
cttggacttcgatctgccatctctaagatgccttcatttcgtgtcaagaaaccaactcca
agctttgatgagaaatcaaaactaattggtgacaaatctaaagctgaaacgaaatccgaa
caagaggttcaacgaagaaagaggatccgacaaacacttgatagtgagggagaggaagat
gatgaaagtgattattcagatgtggacgacaagaaaacaaaaataattggtcggcttgat
gttgatgaagtcttcagcacatcttcatcatctcagagctcggaagatgaagatgatgat
caggagtccagtgaagaggagagtgatgaaggatcggatgaggatgttgaaccattaatt
ggagtgaagaggacaatacatgatgatgtgaggagtgaacctccgaaaaagaagaagaaa
gataacatagatgaagtgaagattgaagctgaagtttccaaaccaacaaacagatctgat
gacgtaataaaagcagcatcaatgttatccgagttacaatccggtaaatcattacttcca
ccatctgcgcctgccaatattgttacatcacaaacattaaaacacgttcatccgaagaaa
agatttcgtttaatttctactgatgcaagtggtcatgagatatctgaaaggcttcgttcc
gatgatgaattatcagctatgagtgacaaagaaaaagcagctttggaagttctcactgat
atgaaatcaacaccagagcgacgaatgtcaactgtaaatagattgtcaagttctgattca
agtgaccaacccatcctcccaactacacctggtcgtcaacacagtgaagtgacgagtgtc
ttctcaccacctctcacccccgcaccatcatcaaggtcaatattcagccatgatacacac
ccaagcagtgacatgcgaatacctataacacccggctctgatacaaatcttagtgatcgt
aaaaagtctgacagcaaagaattggaagcagttcaagcgttgctctcaataaaagagtcc
caacctcccatccctcccctgtctcctcccactcctgtgagcaccaagcatcaaccattg
aagaagagagcagatcttcgtttaactatacctccgaaaagaagcacttctgtgttgaca
caagaggataaagataggatgacagcattagctgaggagcataactactttgcaacatca
ccaagagttaaaccaacatcaagtcacatccatccatctctgcttcaaatattagaagaa
cataactacagctgtccaccgagccaagcaccaaaaacaccactgaaaaaatcccaagat
gaagcaccattcttacataatgatgtcatatcaacatctgaatctccggcatcagcagct
gaacttgtgaaactgcggcatggtgattcaaagatgtacaaaaaaattaaacagaggact
gaccaattatattatgaggagaaaatcaaaaggtcactggttggtcggtttagggaacgc
acacatatggatgatatgaggatgatgtataatatctgggatagagggctggatgtcgaa
gatatgaagtatttacgtcaagaatatgaggatatgttggccaaccctggtacagggggg
tgggtgaatgacacacactgggtgcctcaccctgctacatacttccctgatgaaaacgat
gctctcaccacttctcctgataaaaggaacaaaaggaaaagaaggcaggcacgaaaagat
gatatctcggatatcaaacctcataaaactggatgtgcaagatctgaaggtttttacaaa
gtgaacgataacacgaagttgatacaacggaagttaatgtacagacaagctgacaacaca
ccgcaaccaaaaggtcgatcaaagtacgcaaatgaatctgccagtacatcgggtgtagcc
accgagaaatcccgcgaaacgaggcacatgatgcgacgcattgcatctgaattcggttct
gacgcaagcgatctgcttaagtataatcaacttatgtatcgaaagaagagcgttaagttt
aagcgaagtcatattcatggttggggtctttttgccgaggaaactattggagctgacgaa
atggtcattgaatatgttggccaacttgttcgttccctcattgctgatagaagagaggtt
gattatacacgacgtggtattggaagctcgtatttattccgcattgattctgaccacata
attgatgcgacgaaatgcgggaattttgccagatttatgaaccattcatgcaacccaagt
tgttatgctaaagtaatagccgtggacggggcaaagaagattgtcatatactccaaagat
acaatcaaaccaaccgatgaaataacttacgattataagttcccgatagaagacgttaaa
attccttgtttctgtggcgcacctaactgtcgggggacgcttaattaa
DBGET
integrated database retrieval system
