Ciona intestinalis (yellow sea squirt): 445699
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Entry
445699 CDS
T01056
Symbol
pitx
Name
(RefSeq) paired superclass homeobox transcription factor isoform X1
KO
K04686
paired-like homeodomain transcription factor 2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
445699 (pitx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
445699 (pitx)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
445699 (pitx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
445699
NCBI-ProteinID:
XP_009861304
Ensembl:
ENSCING00000005285
UniProt:
Q4H2Y1
LinkDB
All DBs
Position
Unknown
AA seq
468 aa
AA seq
DB search
MEYRTDNYFSSAAAAAVAAHPPYHHYFNQQTNNYNYSPYHSGGYIGGLSGGSISGGSPSS
SPPSNTSPLFGGSPGTQIAPSSSATSPFSAGLSRYAGKFSAGFSKLNSGGNGPGASALYP
GSGLASLVASGSSYSPQNEKMELQPKSSRVPSHEQVSKSYFEQPYSKCKDSFGSDCQDAP
SPSKSVDSVESSVEEESVEKMEELNPASEAGGSEGETDKKNNKNTNNNTDTEKSSPGNAC
SDDADGDKSKRRQRRQRTHFTSQQLQELEALFARNRYPDMSTREEISAWTNLTEARVRVW
FKNRRAKWRKRERNQLTDFKGFGQFNSFMSHYDGYSYNNWASTMTAGTKAFPWGINAGLN
PLTTQPALGFPSAAPMPSSIAANTVMPTMSMSNGLSGLASGSSVTSPGCHYNPPAPGYMY
RSGTDPCASSLTSLRLKAKQHNPVSPYIGYPAVRDPSAFPPCQYGPTS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggaatacagaacggacaattatttctcttctgcggccgctgcggcagttgctgcccac
ccaccgtatcatcattactttaaccaacaaacgaacaattataactatagcccgtatcac
agtgggggctatattgggggcctgtccggtgggtcaatttcagggggttcgccatcttcg
tccccgccgtcgaatacctcacccctatttgggggttccccgggaacccaaattgcgcca
tcaagctccgctacgtcaccgttttcggctggtttgtcgaggtacgccggaaagttttcg
gccgggttttcgaagctcaattccggcggaaatggacctggagcctcggccctttaccct
ggcagcggtttggcttcgcttgtggcttctggaagtagttactcgcctcagaatgagaaa
atggaactgcagccgaaatcatcgagggtcccttcacacgaacaagtttcaaagtcatat
tttgagcagccttactctaaatgcaaagactcattcggtagcgattgccaagacgcgccg
tcgccaagtaaaagcgtagactctgtagaatcttcagttgaagaagaatcagtcgaaaaa
atggaggaactgaatccagcaagcgaagcaggcggcagtgaaggcgaaaccgacaagaag
aataacaagaacacaaataacaacacagacacagagaaatctagtccagggaacgcatgt
agtgacgatgcagatggcgacaaaagcaaaagacgacaacgcagacagaggacacatttt
acttcacaacagctacaagaattggaagcattattcgcacgaaacaggtatcctgatatg
tcaacgagagaagagatatcagcttggacaaaccttaccgaagcacgagtccgggtctgg
ttcaagaatcgtcgcgcaaaatggcgaaagcgggaacggaatcaacttaccgacttcaaa
gggttcggtcaattcaacagcttcatgtcccattatgatggctattcatacaacaactgg
gcaagcactatgaccgccggtaccaaggctttcccatggggtattaacgccgggttaaat
ccactgacgacccaaccggctctcggttttccttcagcggccccaatgccgagcagtata
gctgcaaacactgttatgcccacaatgagcatgagcaacgggttatccggtctcgcttcc
gggagctctgtcacctcccctggatgccattataacccaccagcgccagggtacatgtat
agaagcggcactgatccatgcgcgtcctctttaacctctctacgcctcaaagctaaacag
cataatcctgtaagtccatacattggataccccgcagtaagagacccgtctgcgtttccc
ccttgtcagtatggccccacatcctaa
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