Ciona intestinalis (yellow sea squirt): 778733
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Entry
778733 CDS
T01056
Symbol
ppar
Name
(RefSeq) nuclear receptor
KO
K03728
nuclear receptor subfamily 1 group D member 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778733 (ppar)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cin03310
]
778733 (ppar)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
778733 (ppar)
Nuclear receptors [BR:
cin03310
]
1. Thyroid hormone like
1D. Rev-Erb
778733 (ppar)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
778733
NCBI-ProteinID:
NP_001071801
Ensembl:
ENSCING00000013188
UniProt:
Q4H2X6
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Position
8:4421574..4441979
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AA seq
644 aa
AA seq
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MSEEKCDKVDADVSPDCVKTECPKVLAPLRKKRPSTKLLVKSTDLNILCKVCGDKASGFH
YGVHACEGCKGFFRRTIRLKIEYETCVQSCKVDLKSRNKCQFCRFKKCVGLGMSRDAIRF
GRMPRHEKQQIIQEIEKKSNKTGSTSGNVLGYQKLITEISESFLQHISLTQERVNACWES
RKALGDKAKTLHTFHDIPACFPNLSTYYAQFKSFTTQDDGKPMAPEMTLSDHLKSFLNST
NRNKSNVSNNGQSKPVMEPAPDIQSSELTSSSPTDQLNSRPSTSSTPSLSSQQHSFELKG
ILDFISMPPNSSSQRDPFHGTMQNSTANGSLNKPSKCDDKLEKEPRLKETPTNASTAFQT
MKNLSNIKTFQSMYETICSPSGESFKLLLEQNPGFLEGMDPTKLVSPCDEMLTPDLKARL
LFASQVFKKNIGKDKPTIYKNVIGSKIVQILYSDFQARVVNGICELTEFAKRLPNFHDIS
LQDQVILLKYGSYETMFVLFSRLIYGEGMILPKSNIYVTFNFVYQLGVAGDIMKSKFLFA
KKMLALELTDDEMALFVAMIILCPDRPEINDRKLVERIQEKVLFALEYQLSISHPHKPRL
FAHLLLKMAELRELVSKHVVMVQKLADAKDFVPPLLCEIMQDMK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggaaaaatgtgataaggttgacgccgatgtttctcccgattgtgttaaaacc
gaatgccccaaagtgcttgcaccattacgaaaaaagcgaccttctacaaagctattggtg
aagtcaacggatttgaatatactatgcaaagtttgtggagataaagcgtctggatttcac
tatggtgtccatgcatgtgaagggtgcaagggattttttcgacggaccattcgactcaaa
attgaatacgaaacttgtgtgcagtcatgcaaagtcgatcttaaaagtcggaacaaatgt
caattctgtcgatttaagaaatgtgttggacttggaatgtcgcgtgatgcaattagattt
ggccgaatgcccagacatgagaagcaacaaattattcaagaaatagaaaaaaaatctaac
aagactggctccacctcgggaaatgtacttggctatcaaaagctaatcacagaaatatcg
gaatcgtttttgcaacatatttcactcacgcaagagcgagtaaatgcatgttgggagtcg
agaaaagcacttggagataaagcaaaaacattacacacatttcatgacattcctgcgtgt
ttcccgaatttgtcgacatattatgcccagtttaaatcatttaccacgcaagatgacggg
aaacccatggctcctgaaatgactctaagtgaccatttgaaaagcttcttaaattccacc
aaccgaaataaatcaaatgtttctaacaatggccaaagcaaaccggttatggaaccagca
ccagacatccaatcatctgaacttaccagttcaagtcccactgatcagttaaattcaaga
ccaagcacttcttcaacccccagcctaagctcacagcaacatagttttgaactaaaagga
attttggattttatctccatgcctccaaatagtagttcacagcgagatcctttccacggt
acaatgcaaaattcaacagccaatgggtctttaaacaagccaagcaaatgcgacgacaaa
ttggaaaaggaacccagattaaaagaaactccaactaatgcatcaactgcctttcaaact
atgaagaatttaagcaacatcaaaacttttcaatctatgtatgaaacaatatgttccccc
tctggtgagtcgttcaaattattacttgaacaaaatcctgggtttttggaaggcatggac
ccgaccaaactggtttctccatgtgatgaaatgctcactcctgatcttaaagcgagactc
ctgtttgcatcacaagtttttaaaaaaaatattggaaaagataagccaacgatctataaa
aatgtaattggaagcaaaatagtgcagattctttacagtgattttcaagcaagggttgtc
aatggaatatgcgagcttactgagtttgccaagcgccttccaaatttccatgatatatct
cttcaagatcaggtaattctattaaagtatggaagctatgagaccatgtttgtactcttc
agtcgattaatttatggagaaggcatgattttacccaagtccaacatatacgtcacattc
aactttgtgtatcaacttggtgttgctggagacataatgaaatcgaaattcttatttgcc
aagaagatgttggcactagaactaacagacgatgaaatggctctctttgttgctatgatt
attctctgtccagatcgacctgaaatcaacgaccgcaaattggtagagcgaatacaggaa
aaagttttatttgcattggaatatcagctctctatatctcaccctcacaaaccaaggttg
ttcgcccacttacttttaaagatggcggaactccgggagctggtatcgaagcatgttgtc
atggtgcagaaattggcggacgctaaggatttcgtcccacctctgctttgtgagatcatg
caggacatgaaataa
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