Ciona intestinalis (yellow sea squirt): 778900
Help
Entry
778900 CDS
T01056
Symbol
gcnf
Name
(RefSeq) nuclear receptor
KO
K08561
germ cell nuclear factor
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
778900 (gcnf)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cin03310
]
778900 (gcnf)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 germ cell nuclear factor
778900 (gcnf)
Nuclear receptors [BR:
cin03310
]
6. Germ cell nuclear factor
6A. Germ cell nuclear factor receptor
778900 (gcnf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
778900
NCBI-ProteinID:
NP_001071940
UniProt:
Q4H3F3
LinkDB
All DBs
Position
1:complement(4692789..4714090)
Genome browser
AA seq
694 aa
AA seq
DB search
MSLDLSRHRMEGISGLSLMSPPQRSFINNMMKQDDSPNSEHIGSYQSNYGMHPFIRGNMG
YRGYGSPYAFVPHAGSSPQSPKIRNESNNESERKDDGKEVKSCLICGDRATGLHYGIISC
EGCKGFFKRSICNKRVYRCTRSKNCVMSRKQRNRCQFCRLLKCLQMGMNRKAIREDGMPG
GRNKSIGPVQISDEEIERILSGKDFEEEAAREEQQQQQQQMNLEQANNPYASMGHSSYMP
LFSPGSGPQYPTNMISSSTGSPPLNNGMRNSSTSSSIPMNARSLMAGANSQLGFVPSMPG
VHVRENSFYPGLPPYQLPHVNRYSMQQGQQIHDRSPESASELTSTTLVEQLVLAEDASFL
VSIGPDHGFNDVTISKDQLFSILCKVADEMLYRQIVWIKKLPFFETISIKDHTTLLSTTW
AEIILLAALCVHEDQLFGDLADITSKYLPDNDELSRFTDYEMEILERVTYLYQKFSHLKI
DREEYVIMKVINFLNQDIKGLQEVERVEEINKRYWYACQRYTELRAMERNAGRSDASSNA
AASGASRFRDLMLCLPEIRYVAGKMLNTDVTKLPLLFKAILHTCKLQKLQSSQLIGRHQN
DAGGTSTPPSPTSSPTQPPRTVRDDDKMAAAASMLDLTSDPSRLNHEQSVRLHGSGSVGP
PSSASTVSPGAHQTSSSPRSSHGRSSRDSAADSS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagacctcagtcggcatagaatggaaggcataagcggcctgtcattaatgtcc
ccccctcagcgctcttttatcaacaacatgatgaagcaagatgactcgcctaacagcgaa
catatcggctcctaccaatcaaactatggcatgcacccttttataaggggcaatatggga
taccggggttatggttccccgtatgctttcgtgccgcacgctggtagttcgccacaatcg
cccaaaattcgcaacgagtcgaataatgaatcggaacgaaaagatgatggaaaagaggtg
aagagttgtctcatctgcggagatcgagccactggacttcactacggcatcatatcatgc
gagggatgtaaaggtttcttcaaacgcagcatctgcaacaaacgagtgtaccgatgcaca
agaagcaagaactgtgtcatgtcaagaaaacaacggaaccgttgtcagttctgccgtcta
ctcaaatgccttcaaatgggcatgaaccgaaaagcgatccgggaagatggcatgcccggt
ggaaggaataaaagcattggaccagttcagatatcagatgaggaaatcgaacgtattctg
tccggaaaagactttgaagaggaagctgctcgggaggagcaacagcagcaacaacaacag
atgaacctcgagcaagcgaacaacccatatgcttcaatgggccactcaagttacatgccg
ctcttctcgccgggatctgggcctcaatacccgaccaacatgatctcatcaagtacgggt
tcaccgccactaaacaacggtatgcggaattcatcaacttcatcctcaattccaatgaac
gcacgatctttaatggctggtgcaaactcacagctcggatttgtaccttcgatgccaggc
gtgcatgtgagagaaaacagcttctacccaggattgccaccataccaactaccccacgtg
aaccgatactcgatgcaacagggtcagcagatacatgaccgatctcctgaatcagcatcc
gaacttacaagcacgacattagttgaacagctggtgttggctgaagacgcatcgtttctt
gtctctattggaccggatcatggttttaatgacgtcacgattagcaaggatcaactcttc
agtattctatgcaaggtagcggatgaaatgctatatcgtcagattgtttggatcaagaag
ttgcccttttttgaaaccatttccattaaagatcacacaactctgttgagtacgacatgg
gccgagattatattacttgctgcactgtgcgtgcatgaagaccagttgtttggcgatcta
gctgatattacgtccaagtatttgcccgacaacgatgagctgtccagattcactgattac
gagatggaaatattggaaagagtaacctacctctaccaaaagttctcgcatctgaaaata
gacagagaggaatatgttatcatgaaagtcatcaatttcttaaaccaagacatcaaaggt
ttacaagaagtagaacgagtggaagaaattaacaagagatattggtatgcttgtcaacgg
tacactgaactccgtgctatggagaggaacgcgggaagatcagatgcctcatccaacgct
gcagcatccggagcatcgagattccgggatctcatgttatgtcttccagagatcagatac
gtggcagggaagatgctcaacactgacgtcactaaacttcctcttttatttaaggctatt
cttcacacatgcaaactgcaaaagttacaatcgagccagttaattggacgtcatcaaaat
gatgcaggcggaacatccactcctccctcaccaacctcatcaccaactcaaccaccacgc
actgttcgtgacgacgacaaaatggctgccgccgcctcaatgcttgatctcacatctgac
ccttcgcgtctcaaccacgaacagtctgttcgtctccacggcagtggatcagtcggccca
ccatcatcagcctcgactgtctcacccggcgcccaccaaacatcgagttctccacgttca
agtcacggccgcagcagtcgcgacagtgccgctgattcctcataa
DBGET
integrated database retrieval system
