Ciona intestinalis (yellow sea squirt): 779001
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Entry
779001 CDS
T01056
Symbol
ror
Name
(RefSeq) nuclear receptor
KO
K08532
RAR-related orphan receptor alpha
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
779001 (ror)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cin03310
]
779001 (ror)
Transcription factors [BR:
cin03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
779001 (ror)
Nuclear receptors [BR:
cin03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
779001 (ror)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
779001
NCBI-ProteinID:
NP_001072021
Ensembl:
ENSCING00000002152
UniProt:
Q4H2V2
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Position
3:complement(396586..410205)
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AA seq
802 aa
AA seq
DB search
MKMNNVEYPERHQSTREMLHCRDYGEVGTLSPVIATHNPHAQVQHFVGFQHTPQPGADHL
HNTPYPIAFGNPQRAPSSFVPLGENEPPEHCAPSVNGRSYNSNAISLYGYNHHPSSPNVS
SPLETGWPDNTPSPNNGRTPTFEELRWRDAYRNISARAQIEIIPCKVCGDKSSGIHYGVI
TCEGCKGFFRRSQQNNYAYSCPRHGNCIIDRSNRNRCQHCRLQKCLRAGMSKDAVKFGRM
SKKQRDRLYLEVLKQQQMRAGQPQVESEAFNQTKPNTVTHSSPTESNVTPYYASAEPRND
VIPTYQDTSPPSMHGGDVMVKIEPPNETAYSQTHGPLTPPAPQTIPVEPKSTEYSVTKNH
YYDVPTSSAEPQSNPVPNFNISENLVSNICEAYYKTCQYSREELASYSKAVRSQEGTLQF
QNMAPDQLWGLCAEKITEAIQHVVEFAKHSNAFMSFDQHDQIILLKTGCLEVVLVRMARA
FNITNQTVLFDEKYTPIETFRSLGCDDLISGMFEMAKSIAELNLTEDQIALFSFAVLITG
DRPGLWESNRLNKLQSVVLGSLQEMFHKTHSDPPDILTKLVMNMLNLRNLSRLHSKYFLY
FKHHFVNVSLPPLYKELFFVDENQPPQHFAPNPAFNQQRRTSNDPQENEYHKHSFLDGGL
ATPNDLGSDASSGSCAIDAQCAILPGAGFVPCTSRSSSTSSVSSSGTAPLGNLSCDDISP
MLSDNKSLTGDQQSLDHVSVNHSDDQIQRNQLAEAERLMEAAMNEHVPHNSQTAYPVQMT
MLTQQHLHTHDGSLGGIPHLSI
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaataacgtggagtatccagagaggcatcaatcgacccgagaaatgcttcat
tgccgtgattatggtgaagtcggaactttaagtccagttatagctacccacaacccccac
gcacaagttcagcactttgttggctttcagcatactccccaacctggtgccgatcacctg
cataacacgccttatccgattgccttcggaaacccacaaagggcgccaagttcctttgta
cccttgggtgaaaatgaaccccctgaacattgtgcgccgtcggtcaacggtcgttcttac
aattcaaatgcaatttctttgtacggttacaatcaccatccgtctagcccaaacgtttca
agtccccttgaaactggctggccggacaacacgcccagtcccaacaatggtcgaacccct
acatttgaggaattgcgttggcgagatgcgtatcgtaatatctcagcccgtgctcaaatt
gagatcatcccgtgtaaggtgtgtggagacaaatcatcaggaatccactatggtgttata
acgtgcgaagggtgcaagggcttctttcgtcgtagccaacagaacaactatgcatactca
tgcccacgtcacggaaattgcatcatagaccgaagtaatagaaacagatgccaacattgc
cggctgcagaaatgtctcagggctggaatgtcaaaagacgctgtcaagtttggccgtatg
tccaagaagcaaagagatcgtctttacctcgaagttttaaagcagcaacaaatgagagct
ggccaaccgcaagttgaaagtgaggcttttaatcaaacgaagcccaacacagtaacacac
agctccccgacggaatcaaacgtcacaccatattatgcatcagcggagccgcgaaatgac
gtcatcccgacgtaccaagacacctccccaccctccatgcatggtggtgacgtaatggtt
aagatcgaacccccaaatgaaacagcttacagtcaaacccacggccctctaaccccacca
gccccccaaaccatcccggtagaaccaaaatcaaccgagtattccgtcacaaagaaccat
tattacgatgtgcctacgtcttcagccgaaccgcaatcgaacccggttcctaacttcaat
atctctgagaaccttgtaagcaatatatgcgaggcttactacaaaacgtgtcagtattcc
cgagaggaacttgccagttattctaaagctgttcgctcccaggaagggacacttcagttt
caaaatatggcaccagatcagttatggggtttatgtgcagagaaaataacagaagcaata
caacatgtcgtcgagttcgctaaacattcaaacgcttttatgtcgtttgatcagcacgat
caaatcattctgctcaaaacaggttgtcttgaagtagtgttggttcgcatggcccgtgct
ttcaacatcaccaaccagactgttctatttgatgagaaatacacgccaatagaaaccttt
agaagtcttggttgtgacgacttgataagcggaatgtttgaaatggcgaaatccatcgct
gaactgaaccttactgaggatcagatcgctttgttctcgtttgcagttcttattactgga
gatcgtccaggtttatgggaatcgaaccgcctcaacaaactccagtctgttgttttgggg
tctctgcaagaaatgtttcataaaacccatagcgacccacctgatattttgaccaagttg
gtaatgaatatgctgaaccttcggaacctgagtcgtctacattccaaatacttcctttac
ttcaaacatcatttcgtcaatgtttcactccctccactttataaggagttatttttcgtc
gacgagaaccaacctccccagcactttgccccgaaccccgcttttaatcagcaacgtcgt
acaagtaacgatccacaagagaacgaataccacaagcatagttttctcgatggtgggctg
gcgacaccgaatgatcttggatctgacgctagctcaggttcatgtgcaatcgacgcccaa
tgcgctatactacccggggctgggttcgtaccttgtaccagtcgttcatcatcgacgtct
tcagtcagcagcagcgggacagcgccgcttggaaacctgagttgtgacgacatatcaccc
atgttgtccgacaacaaatcgctgaccggggaccaacagagtcttgaccacgtctcagta
aatcactccgatgaccagattcagcgcaatcagttggccgaggccgagcggttaatggaa
gccgccatgaacgaacatgttccccacaactcccagacagcctaccctgtacaaatgaca
atgctaacacaacagcatcttcacacacacgatggtagccttggtggaattcctcatcta
tccatataa
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