KEGG   Citrus sinensis (Valencia orange): 102622104
Entry
102622104         CDS       T02983                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:cit00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    102622104
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cit04131]
    102622104
Membrane trafficking [BR:cit04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    102622104
SSDB
Motif
Pfam: Clathrin WD40 zf-RING_2 Vps39_2
Other DBs
NCBI-GeneID: 102622104
NCBI-ProteinID: XP_006487983
LinkDB
Position
8:complement(join(26494361..26494807,26494891..26494972,26495166..26495251,26495340..26495420,26495512..26495631,26495717..26495794,26496410..26496610,26496870..26496935,26497110..26497172,26497277..26497432,26497524..26497617,26497697..26497800,26498655..26498757,26500153..26500243,26500331..26500463,26501023..26501274,26501525..26501704,26501790..26502059,26503040..26503294))
AA seq 953 aa
MAPFPAENGVEGDDEREEEEEEDEDEEEEEEEEEEEPRLKYQRMGGSLPSLLANDAASCV
AVAERMIALGTHAGTVHILDFLGNQVKEFPAHTAAVNDLSFDVDGEYVGSCSDDGSVVIN
SLFTDEKMKFDYHRPMKAISLDPDYTRKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSG
EGPIHVVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTLL
VIGWGTYIKIASIKTNQSNVANGTYRHVGMNQVDIVASFQTSYYISGIAPFGDCLVVLAY
IPGEEDGEKEFSSTLPSRQGNAQRPEVRIVTWNNDELTTDALPVLGFEHYKAKDYSLAHA
PFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLEHGWHEKALAAVEAGQ
GRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPY
MPTENPRLRDTAYEVALVALATNPSFHKYLLSTVKSWPPVIYSALPVISAIEPQLNSSSM
TDALKEALAELYVIDGQYEKAFSLYADLMKPYIFDFIEKHNLHDAIREKVVQLMLLDCKR
AVSLLIQNKDLITPSEVVTQLLNARDKCDSRYFLHLYLHALFEVNLHAGKDFHDMQVELY
ADYDLKMLLPFLRSSQHYTLEKAYEICVKRDLLREQVFILGRMGNTKHALAVIINKLGDI
EEAVEFVNMQHDDELWEELIKQCLNKPEMVGVLLEHTVGNLDPLYIVNMVPNGLEIPRLR
DRLVKIITDYRTETSLRHGCNDILKADIVNLLVKYYKEARRAVCLTNEEDDARAKRVGSR
ASQATEKVPSVRTMEVKSKTRGGARCCMCFDPFSIQNVSVIVFFCCHAYHMDCLKDSMQT
VNGKKGAGATHREPISEYEYDNGVEYENDDDDDDEAQSGASRMRCILCTTAAS
NT seq 2862 nt   +upstreamnt  +downstreamnt
atggctccgtttccggcggaaaacggcgtcgaaggcgacgacgagagagaagaagaagaa
gaagaagacgaagatgaagaagaagaagaagaggaggaggaggaagagccaaggctcaag
tatcaaagaatgggaggcagcttaccttctcttttggcaaacgacgccgcttcgtgcgtt
gctgtagctgaacggatgatcgctctcggtactcacgccggcacagttcatattcttgat
tttttggggaatcaggttaaggagtttcctgctcatactgctgctgtcaacgaccttagc
tttgatgtagatggcgaatatgtaggaagttgttcggatgatggttctgttgtgataaat
agccttttcactgatgaaaaaatgaagttcgattatcatcgcccaatgaaggccatttca
ctggacccagattataccaggaaaatgtctagaagatttgttgctggaggcttagcaggt
catttatatttaaattcaaaaaagtggctaggctaccgagaccaggttttgcactctggt
gaaggtccaattcatgtggtgaagtggaggaccagtctcattgcttgggccaatgatgcg
ggtgtaaaagtttatgatgctgccaatgatcagcgtataacatttattgaaaggccacga
ggaagcccacgtcctgagctcttgcttcctcatttagtttggcaggatgacactctcttg
gtcattggttggggcacgtatatcaaaattgcatcaattaaaacaaatcagagtaatgtt
gcaaatgggacatataggcatgttggcatgaaccaggtggacatagtggcatcttttcag
accagctattatatttcaggaatagctccatttggtgattgtttggttgttctggcttat
attcctggagaggaagatggagaaaaggaatttagtagcactcttccatcacgacagggg
aatgctcagagacctgaagtacgtatagttacatggaataatgatgaacttacaaccgat
gccctaccagtacttggctttgagcattacaaggcgaaggactattcccttgctcatgct
cctttttcaggtagcagctatgctggagggcaatgggctgctggtgatgaaccattgtat
tatattgtatccccgaaggatgtagtcattgcaaaacccagggatgctgaagatcatatt
gcttggcttcttgaacatgggtggcatgaaaaagcattagcagcagttgaagcaggccaa
ggacggagtgaactccttgacgaggtgggatctaggtatcttgatcatttgattgttgaa
aggaaatatgctgaagctgcatctctgtgtcccaaattattaaggggatcggcatcagca
tgggagagatgggttttccattttgctcatcttcgtcagcttcctgtattggttccatac
atgccaacagaaaatccaagattgagggatactgcttatgaggttgcactggtagcactg
gcaacaaatccatctttccataagtatcttttgtcaactgttaaatcctggcctcctgtg
atttactctgcattgcctgttatatctgccatagaacctcagctaaattcttcatccatg
accgatgcactcaaggaggcactagcggagttgtatgttattgatgggcaatatgagaaa
gctttttcactttatgctgatcttatgaagccgtatatatttgacttcattgaaaaacac
aacttacatgatgccattcgtgaaaaggttgtgcaactgatgctcttagattgcaagcgt
gcagtctctttgttgatccagaacaaggacttgattactccatctgaagttgtgacacag
ctactcaatgcaagggacaagtgtgattcgagatattttttgcatttatacctgcatgca
ttatttgaagtaaatctgcatgctggaaaagattttcatgatatgcaggtagagctttat
gccgactatgatctgaagatgctacttccttttcttcgtagtagtcagcattacacactt
gagaaggcatatgaaatttgtgtgaagagagatcttttacgggagcaggtgttcattctt
ggaagaatggggaatacaaaacatgccctagctgtgatcattaataaactaggggacata
gaagaggctgtagaatttgttaacatgcagcatgatgacgaactttgggaagagttgatt
aagcaatgccttaacaaacctgaaatggttggtgtgttgttggagcacactgttggcaat
ctcgatcctctatatatcgtaaatatggtgcccaatggcttagagattcctcgtctgaga
gatcgcctggtgaaaattattactgattacaggactgaaacatctcttagacatgggtgc
aatgacattctgaaggctgatattgtaaatctcttggttaagtactacaaagaagcaagg
cgagcagtttgcttgactaatgaagaagatgatgcacgagcaaaaagagttggcagtagg
gcttctcaggcaaccgaaaaagtgccgagtgttagaaccatggaggttaagtcaaaaact
aggggtggtgcaagatgttgcatgtgttttgatcctttctcaatacaaaatgtatcagta
attgtgttcttttgctgtcatgcttatcacatggattgtcttaaggattccatgcaaact
gttaatggtaagaaaggggctggagccactcaccgagaaccaatttcagaatatgaatat
gataatggtgttgaatatgaaaatgacgacgacgacgacgacgaagcccaatcaggtgcc
tctcgtatgcgttgtatcttatgtaccactgctgctagttga

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