KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100386176
Entry
100386176         CDS       T03264                                 
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
  KO
K06236  collagen type I alpha
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151  PI3K-Akt signaling pathway
cjc04510  Focal adhesion
cjc04512  ECM-receptor interaction
cjc04611  Platelet activation
cjc04820  Cytoskeleton in muscle cells
cjc04926  Relaxin signaling pathway
cjc04933  AGE-RAGE signaling pathway in diabetic complications
cjc04974  Protein digestion and absorption
cjc05146  Amoebiasis
cjc05165  Human papillomavirus infection
cjc05205  Proteoglycans in cancer
cjc05415  Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    100386176 (COL1A1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100386176 (COL1A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100386176 (COL1A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100386176 (COL1A1)
 09150 Organismal Systems
  09151 Immune system
   04611 Platelet activation
    100386176 (COL1A1)
  09152 Endocrine system
   04926 Relaxin signaling pathway
    100386176 (COL1A1)
  09154 Digestive system
   04974 Protein digestion and absorption
    100386176 (COL1A1)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    100386176 (COL1A1)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    100386176 (COL1A1)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    100386176 (COL1A1)
  09166 Cardiovascular disease
   05415 Diabetic cardiomyopathy
    100386176 (COL1A1)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    100386176 (COL1A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cjc00536]
    100386176 (COL1A1)
Glycosaminoglycan binding proteins [BR:cjc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100386176 (COL1A1)
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 100386176
NCBI-ProteinID: XP_035157147
Ensembl: ENSCJAG00000003818
LinkDB
Position
5:112217643..112234992
AA seq 1464 aa
MFSFVDLRLLLLLAAAALLTHGQEEGQVEGQDEDIPPITCVQNGLRYHDRDVWKPEPCRI
CVCDNGKVLCDDVICDETKNCPGAEIPEGECCPVCPDGSEATTDRETTGVEGPKGDTGPR
GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGP
MGPSGPRGLPGPPGSPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR
PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQ
MGPRGLPGERGRPGPPGPAGARGNDGATGAAGPPGPTGPAGPAGFPGAVGAKGEAGPQGP
RGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP
QGPSGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL
PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL
TGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGV
PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGE
QGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGS
QGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGD
KGETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP
PGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGP
AGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGV
VGLPGQRGERGFPGLPGPSGEPGKQGPSGTSGERGPPGPMGPPGLAGPPGESGREGAPGA
EGSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGP
VGSRGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGP
RGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSF
LPQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCR
DLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPNVAQKNWYISKNPKD
KRHVWFGESMTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQ
TGNLKKALLLQGSNEIEIRAEGNSRFTYSVTVDGCTSHTGAWGKTVIEYKTTKTSRLPII
DVAPLDIGAPDQEFGFDVGPACFL
NT seq 4395 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggacctccggctcctgctcctcttagcggccgccgccctcctgacg
cacggccaagaggaaggccaagtcgagggccaagacgaagacatcccaccaatcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgagccctgccggatc
tgcgtctgcgacaacggcaaggtgttgtgtgatgacgtgatctgtgatgagaccaagaac
tgccccggtgccgaaatccccgagggcgagtgctgtcccgtctgccccgacggctcagag
gccaccaccgaccgagaaaccaccggcgtcgagggccccaagggagacactggcccccga
ggcccaaggggacccgcaggcccccctggccgagatggcatccccggacagcctggactt
cccggaccccccggaccccccggacctcccggaccgcctggcctcggaggaaactttgct
ccccagctgtcttatggctatgatgagaaatcaacaggaggaatttccgtgcctggccct
atgggtccctctggtcctcgtggtctccctggcccccctggttcacctggtccccaaggc
ttccaaggtccccctggtgagcctggcgagcctggagcttcaggtcccatgggtccccga
ggtccccccggtccccctggaaagaacggagatgatggggaagctggaaaacctggtcgt
cctggtgagcgtgggcctcctgggcctcagggtgctcgaggattgcctggaacagctggc
ctccctggaatgaagggacacagaggcttcagtggtttggatggtgccaagggagatgct
ggtcctgctggtcccaagggtgagcctggcagccctggtgaaaatggagctcctggtcag
atgggcccccgtggtctgcctggtgagagaggtcgccctggaccccctggccctgctggt
gctcgtggaaatgatggtgctactggtgctgccggcccccctggtcccactggccccgct
ggtcctgctggcttccctggtgctgttggtgctaagggtgaagctggtccccaagggccc
cgaggctctgaaggtccccagggtgtgcgtggtgagcctggcccccctggccctgctggt
gctgctggccctgctggaaaccctggtgctgacggacagcctggtgctaaaggtgccaat
ggtgctcctggtattgctggtgctcctggcttccctggtgcccgaggcccctctggaccc
cagggccccagcggccctcccggtcccaagggtaacagtggtgaacctggtgctcccggc
agcaaaggagacactggtgccaaaggagaacccggccctgttggtgttcaaggaccccct
ggccctgctggagaggaaggaaagcgaggagcccgaggtgaacccggacccactggcctg
cccggaccccctggcgaacgcggtggacctggtagccgtggtttccctggcgccgatggt
gttgctggtcccaagggtcccgctggtgaacgtggttctcccggccctgctggccccaaa
ggatctcctggtgaagctggtcgtcccggtgaagctggcctgcctggtgccaagggtctg
actggaagccctggcagccccggtcctgatggcaaaactggcccccctggtcccgctggt
caagatggtcgccccggacccccaggccctcctggtgcccgtggtcaggctggtgtgatg
ggatttcctggacctaaaggtgctgctggagagcccggcaaggctggagagcgaggtgtt
cctggaccccctggcgctgttggtcctgctggcaaagatggagaggctggagctcaggga
ccccctggccctgctggtcccgctggtgagagaggtgaacaaggtcctgctgggtccccc
ggattccagggtctccctggacccgctggtcctcctggtgaagcaggcaaacctggtgaa
cagggtgttcctggagaccttggtgcccccggcccctctggagcaagaggcgagagaggc
ttccctggcgagcgtggtgtgcaaggtccccctggtcctgctggtccccgtggggccaat
ggtgctcccggcaacgatggtgctaagggtgatgctggtgctcctggagcccccggtagc
cagggtgcccctggccttcagggaatgcctggtgaacgtggtgcagctggccttccaggg
cctaagggtgacagaggtgatgctggtcccaaaggtgctgatggctctcctggcaaagat
ggcgtccgtggtctaactggccccattggtcctcctggccctgctggtgcccctggtgac
aagggtgaaaccggtcccagcggccctgctggtcccactggagctcgtggcgcccctgga
gaccgtggtgagcctggtccccctggccctgctggcttcgctggcccccccggtgctgat
ggccaacctggtgctaaaggcgaacctggagatgctggtgctaaaggcgatgctggtccc
cctggccctgccggacccgctggcccccctggccccattggtaacgttggtgctcctgga
cccaaaggtgctcgcggcagcgctggtccccctggtgctactggtttccctggtgctgct
ggccgagtcggtcctcctggcccttccggaaatgctggaccccctggccctcctggtcct
gctggcaaagaaggcggcaaaggtccccgtggtgagactggccctgctggacgtcctggt
gaagttggcccccctggcccccctggccctgccggagagaaaggatcccctggtgctgat
ggacctgctggtgctcctggtactcccggacctcaaggtattgctggacagcgtggtgtg
gtcggcctgcctggtcagagaggagaaagaggcttccctggtcttcctggcccctctggt
gaacctggcaaacaaggtccctctggaacaagtggtgaacgtggtccccctggtcccatg
ggcccacctggattggccggaccccctggtgaatctggacgtgagggagctcctggcgct
gaaggttcccctggacgagatggttctcctggccccaagggtgaccgtggtgagactggc
cccgctggaccccctggtgctcctggtgctcctggtgcccctggccccgttggccctgct
ggcaagagtggtgatcgtggtgagactggtcctgctggtcccgccggtcctatcggccct
gttggctcccgtggccccgctggaccccaaggcccccgtggtgacaagggcgagactggt
gaacagggtgacagaggcataaagggtcaccgtggcttctctggcctccagggtccccct
ggccctcccggctctcctggtgaacaaggtccctctggagcctctggtcctgctggtccc
cgaggtccccctggctctgctggtgctcctggcaaagatggactcaacggtctcccaggc
cccatcgggccccctggtcctcgcggtcgcactggtgatgctggtcctgttggtcccccc
ggccctcctggccctcctggtccccctggtcctcccagcggtggtttcgacttcagcttc
ctgccccagccacctcaagagaaggctcacgatggtggccgctactaccgggctgatgat
gccaatgtggttcgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccag
cagatcgagaacatccggagccctgagggcagccgcaaaaaccccgcccgcacctgccgc
gacctcaagatgtgccactctgactggaagagcggagagtactggattgaccccaaccaa
ggctgcaacctggatgccatcaaggtcttctgcaacatggagactggagagacctgcgtg
taccccactcagcccaacgtggcccagaagaactggtacatcagcaagaaccccaaggac
aagaggcacgtgtggtttggcgagagcatgaccgacggattccagttcgagtatggtggt
gagggctccgaccctgccgatgtggccatccagctgaccttcctgcgcctgatgtccacc
gaagcctcccagaacatcacctaccactgcaagaacagcgtggcctacatggaccagcag
actggcaacctcaagaaggctctgctcctccagggctccaacgagatcgagatccgcgcc
gagggcaacagccgcttcacctacagcgtcaccgtcgatggctgcacgagtcacactgga
gcctggggcaagacagtgatcgaatacaaaaccaccaagacctcccgcctgcccatcatc
gatgtggcccccttggacattggcgccccagaccaggaattcggcttcgacgttggccct
gcctgcttcctgtaa

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