Callithrix jacchus (white-tufted-ear marmoset): 100386176
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Entry
100386176 CDS
T03264
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151
PI3K-Akt signaling pathway
cjc04510
Focal adhesion
cjc04512
ECM-receptor interaction
cjc04611
Platelet activation
cjc04820
Cytoskeleton in muscle cells
cjc04926
Relaxin signaling pathway
cjc04933
AGE-RAGE signaling pathway in diabetic complications
cjc04974
Protein digestion and absorption
cjc05146
Amoebiasis
cjc05165
Human papillomavirus infection
cjc05205
Proteoglycans in cancer
cjc05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100386176 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100386176 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100386176 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100386176 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100386176 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
100386176 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
100386176 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
100386176 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100386176 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
100386176 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100386176 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100386176 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100386176 (COL1A1)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100386176 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
100386176
NCBI-ProteinID:
XP_035157147
Ensembl:
ENSCJAG00000003818
LinkDB
All DBs
Position
5:112217643..112234992
Genome browser
AA seq
1464 aa
AA seq
DB search
MFSFVDLRLLLLLAAAALLTHGQEEGQVEGQDEDIPPITCVQNGLRYHDRDVWKPEPCRI
CVCDNGKVLCDDVICDETKNCPGAEIPEGECCPVCPDGSEATTDRETTGVEGPKGDTGPR
GPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGP
MGPSGPRGLPGPPGSPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR
PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQ
MGPRGLPGERGRPGPPGPAGARGNDGATGAAGPPGPTGPAGPAGFPGAVGAKGEAGPQGP
RGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGP
QGPSGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGL
PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGL
TGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGV
PGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGE
QGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGS
QGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGD
KGETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP
PGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGP
AGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGV
VGLPGQRGERGFPGLPGPSGEPGKQGPSGTSGERGPPGPMGPPGLAGPPGESGREGAPGA
EGSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGP
VGSRGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGP
RGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSF
LPQPPQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCR
DLKMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPNVAQKNWYISKNPKD
KRHVWFGESMTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQ
TGNLKKALLLQGSNEIEIRAEGNSRFTYSVTVDGCTSHTGAWGKTVIEYKTTKTSRLPII
DVAPLDIGAPDQEFGFDVGPACFL
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccgccgccctcctgacg
cacggccaagaggaaggccaagtcgagggccaagacgaagacatcccaccaatcacctgc
gtacagaacggcctcaggtaccatgaccgagacgtgtggaaacccgagccctgccggatc
tgcgtctgcgacaacggcaaggtgttgtgtgatgacgtgatctgtgatgagaccaagaac
tgccccggtgccgaaatccccgagggcgagtgctgtcccgtctgccccgacggctcagag
gccaccaccgaccgagaaaccaccggcgtcgagggccccaagggagacactggcccccga
ggcccaaggggacccgcaggcccccctggccgagatggcatccccggacagcctggactt
cccggaccccccggaccccccggacctcccggaccgcctggcctcggaggaaactttgct
ccccagctgtcttatggctatgatgagaaatcaacaggaggaatttccgtgcctggccct
atgggtccctctggtcctcgtggtctccctggcccccctggttcacctggtccccaaggc
ttccaaggtccccctggtgagcctggcgagcctggagcttcaggtcccatgggtccccga
ggtccccccggtccccctggaaagaacggagatgatggggaagctggaaaacctggtcgt
cctggtgagcgtgggcctcctgggcctcagggtgctcgaggattgcctggaacagctggc
ctccctggaatgaagggacacagaggcttcagtggtttggatggtgccaagggagatgct
ggtcctgctggtcccaagggtgagcctggcagccctggtgaaaatggagctcctggtcag
atgggcccccgtggtctgcctggtgagagaggtcgccctggaccccctggccctgctggt
gctcgtggaaatgatggtgctactggtgctgccggcccccctggtcccactggccccgct
ggtcctgctggcttccctggtgctgttggtgctaagggtgaagctggtccccaagggccc
cgaggctctgaaggtccccagggtgtgcgtggtgagcctggcccccctggccctgctggt
gctgctggccctgctggaaaccctggtgctgacggacagcctggtgctaaaggtgccaat
ggtgctcctggtattgctggtgctcctggcttccctggtgcccgaggcccctctggaccc
cagggccccagcggccctcccggtcccaagggtaacagtggtgaacctggtgctcccggc
agcaaaggagacactggtgccaaaggagaacccggccctgttggtgttcaaggaccccct
ggccctgctggagaggaaggaaagcgaggagcccgaggtgaacccggacccactggcctg
cccggaccccctggcgaacgcggtggacctggtagccgtggtttccctggcgccgatggt
gttgctggtcccaagggtcccgctggtgaacgtggttctcccggccctgctggccccaaa
ggatctcctggtgaagctggtcgtcccggtgaagctggcctgcctggtgccaagggtctg
actggaagccctggcagccccggtcctgatggcaaaactggcccccctggtcccgctggt
caagatggtcgccccggacccccaggccctcctggtgcccgtggtcaggctggtgtgatg
ggatttcctggacctaaaggtgctgctggagagcccggcaaggctggagagcgaggtgtt
cctggaccccctggcgctgttggtcctgctggcaaagatggagaggctggagctcaggga
ccccctggccctgctggtcccgctggtgagagaggtgaacaaggtcctgctgggtccccc
ggattccagggtctccctggacccgctggtcctcctggtgaagcaggcaaacctggtgaa
cagggtgttcctggagaccttggtgcccccggcccctctggagcaagaggcgagagaggc
ttccctggcgagcgtggtgtgcaaggtccccctggtcctgctggtccccgtggggccaat
ggtgctcccggcaacgatggtgctaagggtgatgctggtgctcctggagcccccggtagc
cagggtgcccctggccttcagggaatgcctggtgaacgtggtgcagctggccttccaggg
cctaagggtgacagaggtgatgctggtcccaaaggtgctgatggctctcctggcaaagat
ggcgtccgtggtctaactggccccattggtcctcctggccctgctggtgcccctggtgac
aagggtgaaaccggtcccagcggccctgctggtcccactggagctcgtggcgcccctgga
gaccgtggtgagcctggtccccctggccctgctggcttcgctggcccccccggtgctgat
ggccaacctggtgctaaaggcgaacctggagatgctggtgctaaaggcgatgctggtccc
cctggccctgccggacccgctggcccccctggccccattggtaacgttggtgctcctgga
cccaaaggtgctcgcggcagcgctggtccccctggtgctactggtttccctggtgctgct
ggccgagtcggtcctcctggcccttccggaaatgctggaccccctggccctcctggtcct
gctggcaaagaaggcggcaaaggtccccgtggtgagactggccctgctggacgtcctggt
gaagttggcccccctggcccccctggccctgccggagagaaaggatcccctggtgctgat
ggacctgctggtgctcctggtactcccggacctcaaggtattgctggacagcgtggtgtg
gtcggcctgcctggtcagagaggagaaagaggcttccctggtcttcctggcccctctggt
gaacctggcaaacaaggtccctctggaacaagtggtgaacgtggtccccctggtcccatg
ggcccacctggattggccggaccccctggtgaatctggacgtgagggagctcctggcgct
gaaggttcccctggacgagatggttctcctggccccaagggtgaccgtggtgagactggc
cccgctggaccccctggtgctcctggtgctcctggtgcccctggccccgttggccctgct
ggcaagagtggtgatcgtggtgagactggtcctgctggtcccgccggtcctatcggccct
gttggctcccgtggccccgctggaccccaaggcccccgtggtgacaagggcgagactggt
gaacagggtgacagaggcataaagggtcaccgtggcttctctggcctccagggtccccct
ggccctcccggctctcctggtgaacaaggtccctctggagcctctggtcctgctggtccc
cgaggtccccctggctctgctggtgctcctggcaaagatggactcaacggtctcccaggc
cccatcgggccccctggtcctcgcggtcgcactggtgatgctggtcctgttggtcccccc
ggccctcctggccctcctggtccccctggtcctcccagcggtggtttcgacttcagcttc
ctgccccagccacctcaagagaaggctcacgatggtggccgctactaccgggctgatgat
gccaatgtggttcgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccag
cagatcgagaacatccggagccctgagggcagccgcaaaaaccccgcccgcacctgccgc
gacctcaagatgtgccactctgactggaagagcggagagtactggattgaccccaaccaa
ggctgcaacctggatgccatcaaggtcttctgcaacatggagactggagagacctgcgtg
taccccactcagcccaacgtggcccagaagaactggtacatcagcaagaaccccaaggac
aagaggcacgtgtggtttggcgagagcatgaccgacggattccagttcgagtatggtggt
gagggctccgaccctgccgatgtggccatccagctgaccttcctgcgcctgatgtccacc
gaagcctcccagaacatcacctaccactgcaagaacagcgtggcctacatggaccagcag
actggcaacctcaagaaggctctgctcctccagggctccaacgagatcgagatccgcgcc
gagggcaacagccgcttcacctacagcgtcaccgtcgatggctgcacgagtcacactgga
gcctggggcaagacagtgatcgaatacaaaaccaccaagacctcccgcctgcccatcatc
gatgtggcccccttggacattggcgccccagaccaggaattcggcttcgacgttggccct
gcctgcttcctgtaa
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