Callithrix jacchus (white-tufted-ear marmoset): 100388823
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Entry
100388823 CDS
T03264
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151
PI3K-Akt signaling pathway
cjc04510
Focal adhesion
cjc04512
ECM-receptor interaction
cjc04820
Cytoskeleton in muscle cells
cjc04926
Relaxin signaling pathway
cjc04933
AGE-RAGE signaling pathway in diabetic complications
cjc04974
Protein digestion and absorption
cjc05146
Amoebiasis
cjc05165
Human papillomavirus infection
cjc05200
Pathways in cancer
cjc05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100388823 (COL4A3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100388823 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100388823 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100388823 (COL4A3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100388823 (COL4A3)
09154 Digestive system
04974 Protein digestion and absorption
100388823 (COL4A3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100388823 (COL4A3)
09162 Cancer: specific types
05222 Small cell lung cancer
100388823 (COL4A3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100388823 (COL4A3)
09174 Infectious disease: parasitic
05146 Amoebiasis
100388823 (COL4A3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100388823 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjc04147
]
100388823 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100388823 (COL4A3)
Exosome [BR:
cjc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100388823 (COL4A3)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100388823 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100388823
NCBI-ProteinID:
XP_008997864
Ensembl:
ENSCJAG00000012821
LinkDB
All DBs
Position
6:145277950..145428098
Genome browser
AA seq
1666 aa
AA seq
DB search
MALRPQVLLLPLLLVLLAAASAAGKGCICKDKGQCFCDGAKGQKGEKGFPGPPGSPGQKG
FTGPEGLPGPQGPKGSPGLPGLTGAKGVRGITGLPGFSGSPGLPGTPGNTGPYGLTGIPG
CNGSKGEQGFPGLPGTPGYPGILGAAGLKGQKGAPAKGEDTELDAKGDPGLPGAPGPQGL
PGPPGFPGPVGPPGPPGFFGFPGAVGPRGPKGHMGDRVIGRKGERGVKGLTGPPGPPGTV
TVTLTGPDNRTNLKGEKGDRGAMGEPGPPGPSGLPGESYGSEKGAPGEPGPQGKPGKDGV
PGFPGSEGVKGNRGFPGLTGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDKGIPGPPGP
KGARGPQGPSGPPGVPGSPGPSRPGLRGVPGWPGLKGSKGERGPPGKDAMGTRGSPGCPG
SPGPTGSPGPPGPPGDIVFRKGPPGDRGLPGYLGSPGILGVDGPKGEPGLLCTQCPYIPG
PPGLPGLPGLHGVKGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETL
QPKGQVGAPGDPGLRGQPGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDRGPPGDPGSP
GFPGPAGPAGPPGYGPQGKPGPKGTQGIPGAPGPPGEAGPRGEVSVSTPVPGPPGPPGAP
GLAGPQGPPGIPGSMGKYGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPG
KMGEPGLPGKPGLPGDKGEPALAMPGGPGTPGFPGERGNSGEHGEIGLPGLPGLPGTPGN
EGLDGPRGDPGQPGPPGEQGPQGRCIEGPRGAQGLPGLNGLKGQQGRRGKTGPKGDPGIP
GLDRSGFPGETGSPGRPGHQGEMGPPGQKGYPGNPGILGPPGEDGMVGMMGFPGAIGPPG
PPGIPGMPGQRGSLGIPGVKGQRGTPGAKGEQGDKGNPGPSQISHLIGDKGEPGLKGFAG
NMGEKGNRGVPGLPGLKGLQGLPGPPGPPGPRGDLGSIGNPGEPGPRGVPGSMGNMGMPG
SKGKKGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGIRPGPPGPTGDPGLPGDMGKKGE
MGQPGPPGHSGPAGPEGVIGSPGSPGLPGKPGPHGDLGFKGIKGFTGPPGIKGPPGLPGF
PGSPGPMGIRGDQGRDGIPGPAGEKGETGLLGAPPGPRGNPGAPGAKGDRGAPGLPGLPG
RKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQKGNRGPAGSRGSPGEPGPSGPPGSHIK
GIKGDKGSMGHPGPKGPPGTVGDMGPPGHPGAPGTPGLPGLRGDPGFQGFPGVKGEKGNP
GFLGSIGPPGPIGPKGPPGIRGDPGTLQIISLPGSPGPPGTPGEPGMRGEPGPPGPPGNL
GPCGPRGKPGKDGKPGIPGPVGEKGNKGSKGEQGPPGSDGLPGLKGKPGDIGSPATWTTR
GFVFTRHSQTTAIPSCPEGTVPLYSGFSFLYVQGNQRAHGQDLGTLGSCLQRFTTMPFLF
CNINDVCNFASRNDYSYWLSTPALMPMNMAPITGRALEPYISRCTVCEGPAIVIAVHSQT
TDIPPCPHGWISLWTGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFLECHGRGTCNY
YSNSYSFWLASLNPERMFRKPIPSTVKAGELEKIISRCQVCMKKRQ
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcaggccgcaggtgctcctgctgccgctcctgctggtgctcctggcggcggcg
agcgcggccggcaagggctgtatctgtaaagacaaaggccagtgcttctgtgatggagcc
aaaggacagaagggggaaaaaggttttcctggaccccctggttctcctggccagaaagga
ttcacaggtcctgaaggcttgcctggaccacagggacccaagggttctccaggacttcca
ggactcactggtgccaaaggtgtaaggggaataactggattgccaggattttccggttct
cctggacttccaggcaccccaggcaatactggaccatacggacttactggtataccagga
tgcaatggttctaagggtgagcaggggtttccaggactcccagggacaccaggctaccca
gggatcctgggtgctgctggtttgaaagggcaaaagggtgctcctgctaaaggagaagat
acagaacttgatgcaaaaggtgatcccgggttgccaggggctccaggaccgcagggtttg
ccaggccctccaggttttcctggccctgttggcccacctggtcctccgggattctttggc
tttccaggagccgtgggacctagaggacctaagggtcacatgggtgacagagtgatagga
cgaaaaggagagcggggtgtgaaagggttaacaggacccccagggccaccaggaacagtt
actgtgaccctcactggcccagataacagaacgaacctcaagggggaaaagggagacagg
ggagcgatgggcgagcctggacctcctggaccctcaggactgcctggagaatcatatgga
tctgaaaagggtgctcctggagaacctggcccacagggaaaacctggaaaagatggtgtt
cctggcttccctggaagtgagggagtcaagggcaacaggggtttccctgggttaacgggt
gaagatggcattaagggacagaaaggggacattggccctccaggatttcgtggtccaaca
gaatattatgacacataccaggaaaagggagataaaggcattccaggcccgccagggccc
aaaggagctcgtggcccacaaggtcccagtggtcccccaggagttcctggaagtcctgga
ccatcaaggcctggcctcagaggagtccctggatggccaggcttgaaaggaagtaaaggg
gaacgaggccccccaggaaaggatgccatggggactcgtgggtccccaggatgtcctggt
tcaccaggccctacaggatctccgggacctccaggaccaccaggtgacatcgtttttcgc
aagggtccacctggagatcgtggactgccaggctatctaggctctccaggaatcctcgga
gttgatgggcccaaaggagaaccaggtctcttgtgtacacagtgcccttacatcccaggg
cctcccggtctcccaggattgccagggttacatggcgtaaaaggaattccaggaagacaa
ggtgcagctggcttgaaaggaagtccagggtccccaggaaatacaggtcttccaggattt
ccaggattcccaggtgctcagggtgacccaggacttaaaggagaaaaaggtgaaacgctt
cagcctaaggggcaagtgggtgccccaggggacccggggctaagagggcaacctgggaga
aagggcttggatggaattcctggaactccgggagtgaaaggattaccaggacctaaaggc
gaactggctctgagtggtgagaagggggaccgaggtcctccaggggatcctggctctcct
gggttcccaggacctgcaggaccagctggaccaccgggctatggaccccaaggaaagcct
ggtcccaagggcactcaaggaattcctggagcccctggaccacctggagaagccggtcct
agaggagaggtcagtgtttcaacaccagttccaggcccaccaggacctccaggggcccct
ggccttgctggcccccaaggtccacccggtatccctggatccatggggaaatatggagat
cctggtcttccagggcctgatggtgaaccaggaattccaggaattggatttcctgggcct
cctggacctaagggagaccaaggatttccaggtacaaaaggatccctggggtgtcctgga
aaaatgggagagcctgggttacctggaaagccaggcctcccaggagacaagggagagcca
gcactagccatgcctggaggaccaggaacaccaggttttccaggagaaagaggcaattct
ggggaacatggagaaattggactccctggacttccaggtctccctggaactccaggaaat
gaagggcttgatggaccacgaggagatccagggcagcctggaccacctggagaacaagga
ccccaaggaaggtgcatagagggtccaagaggagcccaaggacttccaggcttaaacgga
ttgaaagggcaacaaggcagaagaggtaaaacagggccaaagggagacccaggaattcca
ggcttggatagatcaggatttcctggagaaactggatcaccaggaaggccaggccatcaa
ggcgagatgggaccaccaggtcaaaaaggatatccaggaaatccaggaattttagggcca
ccaggtgaagatggaatggttggaatgatgggctttcctggagccattggccctccaggg
ccccctgggatcccaggcatgccagggcagaggggaagccttggaattccaggagtaaag
ggccagagaggaaccccaggagccaaaggggaacaaggagataaaggaaatcccgggcct
tctcagatatcccacttaataggggacaaaggagaaccaggtctcaaaggattcgcagga
aatatgggtgagaaaggaaacagaggtgttccagggctgccaggtttaaaaggcctccaa
ggactacctggaccaccaggaccaccaggccccagaggagatttgggcagcattgggaat
cctggagaaccaggaccacgtggtgtgccagggagcatggggaacatgggtatgccaggt
tctaaaggaaaaaagggaactttgggattcccaggtcgagctggaagaccaggccttcca
ggtattcacggtctccagggagataagggagagccaggttattcagaaggtataagacca
ggaccaccaggaccaacgggggatccaggactgccaggtgatatgggaaagaaaggagaa
atggggcaacctggcccacctggacattcggggcctgccggacctgagggagtcattgga
agtcctggaagtcctggccttccaggaaagccaggtcctcatggtgatttgggttttaaa
ggaatcaaaggcttcacgggccctccaggaatcaaaggccctccaggtcttccaggattc
ccaggatctcctggaccaatgggtataagaggtgaccaaggacgtgatggaattcctggt
ccagccggagaaaagggagaaacaggtttattgggggcccctccaggcccaagagggaac
cctggtgctccaggagccaaaggagacagaggagccccaggtttgcctggcctccctggc
agaaaaggggccatgggagatgctgggcctcgagggcccacaggcattgaaggattccca
gggccaccaggtctgccgggtgcaatcatccctggccagaaaggaaaccgtggtccggca
ggctcaagaggaagcccaggtgagcctggtccctctggacctccagggagtcacataaaa
ggcataaaaggagacaaagggtctatgggccaccccggcccaaaaggtccacctggaact
gtaggagacatgggaccaccaggtcatccgggagcaccagggactccaggtcttccaggc
ctcagaggtgatcctggattccaggggtttcccggtgtgaaaggagaaaagggtaatcct
ggatttctaggatccattggacctccaggaccaattgggccaaaaggaccacctggtata
cgtggagaccctggcacccttcagattatctcccttccaggaagcccaggaccacctggc
acacctggagaaccagggatgcggggagaacctgggccaccagggccgcctggaaaccta
ggaccttgtgggccaagaggtaaaccaggcaaggatggaaaaccaggaattcctggacca
gttggagaaaaaggcaacaaaggttctaaaggagagcaaggaccacctggatcagacgga
ttacccggtttgaagggaaaacctggagacattggatcacctgcaacctggacgacgaga
ggctttgtcttcacccgacacagtcaaaccacagcaattccttcatgtccagaagggaca
gtgccactctacagtgggttttcttttctttatgtacaaggaaatcaacgagcccacgga
caagaccttggaactcttggcagctgcctgcagcgatttaccacaatgccattcttattc
tgcaatatcaatgatgtatgtaatttcgcatctcgaaatgattattcatactggctgtca
acaccagctctgatgccaatgaacatggctcccattactggcagggcccttgagccttac
ataagcagatgcactgtctgtgaaggtcctgcgatcgtcatagccgttcacagtcaaacc
actgacattcctccatgtcctcatggctggatttctctctggacaggattttctttcatc
atgttcacaagtgcaggttctgagggtgctgggcaagcactggcctcccctggctcctgc
ctggaagaattccgagccagcccatttcttgaatgtcatggaagaggaacgtgcaactac
tattcaaattcctacagtttctggctggcttcattaaacccagaaagaatgttcagaaag
cctattccatcaactgtgaaagctggggaattagaaaaaataataagtcgctgtcaggtg
tgcatgaagaaaagacaatga
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integrated database retrieval system
