KEGG   Callithrix jacchus (white-tufted-ear marmoset): 100401228
Entry
100401228         CDS       T03264                                 
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 1-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cjc  Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03082  ATP-dependent chromatin remodeling
cjc03083  Polycomb repressive complex
cjc04110  Cell cycle
cjc04213  Longevity regulating pathway - multiple species
cjc04330  Notch signaling pathway
cjc04350  TGF-beta signaling pathway
cjc04613  Neutrophil extracellular trap formation
cjc04919  Thyroid hormone signaling pathway
cjc05016  Huntington disease
cjc05031  Amphetamine addiction
cjc05034  Alcoholism
cjc05165  Human papillomavirus infection
cjc05169  Epstein-Barr virus infection
cjc05200  Pathways in cancer
cjc05202  Transcriptional misregulation in cancer
cjc05203  Viral carcinogenesis
cjc05206  MicroRNAs in cancer
cjc05220  Chronic myeloid leukemia
Brite
KEGG Orthology (KO) [BR:cjc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    100401228
   03083 Polycomb repressive complex
    100401228
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    100401228
   04350 TGF-beta signaling pathway
    100401228
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    100401228
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    100401228
  09152 Endocrine system
   04919 Thyroid hormone signaling pathway
    100401228
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    100401228
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100401228
   05202 Transcriptional misregulation in cancer
    100401228
   05206 MicroRNAs in cancer
    100401228
   05203 Viral carcinogenesis
    100401228
  09162 Cancer: specific types
   05220 Chronic myeloid leukemia
    100401228
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    100401228
   05165 Human papillomavirus infection
    100401228
  09164 Neurodegenerative disease
   05016 Huntington disease
    100401228
  09165 Substance dependence
   05031 Amphetamine addiction
    100401228
   05034 Alcoholism
    100401228
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cjc03036]
    100401228
Enzymes [BR:cjc01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     100401228
Chromosome and associated proteins [BR:cjc03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     100401228
   HDAC complexes
    Sin3A-HDAC complex
     100401228
    BRAF-HDAC complex
     100401228
    REST complex
     100401228
    SHIP complex
     100401228
    MiDAC complex
     100401228
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     100401228
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    100401228
  Chromatin remodeling factors
   NuRD complex
    100401228
SSDB
Motif
Pfam: Hist_deacetyl DUF5491 Peptidase_C101
Other DBs
NCBI-GeneID: 100401228
NCBI-ProteinID: XP_054110547
LinkDB
Position
4:complement(161146430..161149666)
AA seq 482 aa
MAQMQGTWRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYQKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCXLSIGGSVAS
AVKLNKQQMDIAVNWAGGLHHAKKFEASGFCYVNDTVLAILELLKYHQRVLYIDIDIHHG
NGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAINCPLQDGIDNESYEAI
FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTITGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVAQCWTYETAVALDTEMPNELPYNDYFEYFGPDFKLHISPSNMTDQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKHISICSSDKRIACQEEF
SDXEEEGEGGRKNASNFKKAKRVKTEDEQEKEPEEKKEVTEKEKTKEEKPEAKGVKEEVK
LA
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggcgcagatgcagggcacctggcggaaagtctgttactactacgacggggatgttgga
aattactattatggacaaggccacccaatgaagcctcaccgaatccgcatgactcataat
ttgctgctcaactatggtctctaccaaaaaatggaaatctatcgccctcacaaagccaat
gctgaggagatgaccaagtaccacagcgatgactacattaaattcttgcgctccatccgt
ccagataacatgtccgagtacagcaagcagatgcagagattcaacgttggtgaggactgt
ccagtattcgatggcctgtttgagttctgttagttgtctattggtggttctgtggcaagt
gctgtgaaacttaataagcagcagatggacatcgctgtgaattgggctgggggcctgcac
catgcaaagaagttcgaggcatctggcttctgttacgtcaatgatactgtcttggccatc
ctggaactgctaaagtatcaccagagggtgctgtatattgacattgatattcaccatggc
aacggtgtggaagaggccttctataccacagaccgggtcatgactgtgtcctttcataag
tatggagagtacttcccaggaactggggacctacgggatatcggggctggcaaaggcaag
tattatgctattaactgcccgctccaagatgggattgataacgagtcctatgaggccatt
ttcaagccagtcatgtccaaagtaatggagatgttccagcctagtgccgtggtcttacag
tgtggctcagactccctatctggggatcggttaggttgcttcaatctgaccatcacaggg
cacgccaagtgtgtggaatttgtcaagagctttaacctgcccatgctgatgctgggagga
ggtggttacaccattcgtaatgttgcccaatgctggacgtatgagacagctgtggccctg
gatacggagatgcctaatgagcttccatacaacgactacttcgaatactttggaccagat
ttcaagctccacatcagtccttccaatatgactgaccagaacacgaatgagtacttggag
aagatcaaacagcgactgtttgagaacctgaggatgctgccacatgcacccggggtccaa
atgcaggcgattcctgaggacgccatccctgaggagagtggcgatgaagacgaagaagac
cctgacaagcacatctcgatctgctcctctgacaaacgaattgcctgtcaggaagagttc
tcagacnntgaagaggagggagaggggggccgcaagaacgcttccaacttcaaaaaagcc
aagagagtcaaaacagaggatgaacaagagaaagagccagaggagaagaaagaagtcaca
gaaaaggagaaaaccaaggaggagaagccagaagccaaaggggtcaaagaggaggtcaag
ttggcctaa

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