Callithrix jacchus (white-tufted-ear marmoset): 100401228
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Entry
100401228 CDS
T03264
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 1-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03082
ATP-dependent chromatin remodeling
cjc03083
Polycomb repressive complex
cjc04110
Cell cycle
cjc04213
Longevity regulating pathway - multiple species
cjc04330
Notch signaling pathway
cjc04350
TGF-beta signaling pathway
cjc04613
Neutrophil extracellular trap formation
cjc04919
Thyroid hormone signaling pathway
cjc05016
Huntington disease
cjc05031
Amphetamine addiction
cjc05034
Alcoholism
cjc05165
Human papillomavirus infection
cjc05169
Epstein-Barr virus infection
cjc05200
Pathways in cancer
cjc05202
Transcriptional misregulation in cancer
cjc05203
Viral carcinogenesis
cjc05206
MicroRNAs in cancer
cjc05220
Chronic myeloid leukemia
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100401228
03083 Polycomb repressive complex
100401228
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
100401228
04350 TGF-beta signaling pathway
100401228
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
100401228
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
100401228
09152 Endocrine system
04919 Thyroid hormone signaling pathway
100401228
09149 Aging
04213 Longevity regulating pathway - multiple species
100401228
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100401228
05202 Transcriptional misregulation in cancer
100401228
05206 MicroRNAs in cancer
100401228
05203 Viral carcinogenesis
100401228
09162 Cancer: specific types
05220 Chronic myeloid leukemia
100401228
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
100401228
05165 Human papillomavirus infection
100401228
09164 Neurodegenerative disease
05016 Huntington disease
100401228
09165 Substance dependence
05031 Amphetamine addiction
100401228
05034 Alcoholism
100401228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cjc03036
]
100401228
Enzymes [BR:
cjc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100401228
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
100401228
HDAC complexes
Sin3A-HDAC complex
100401228
BRAF-HDAC complex
100401228
REST complex
100401228
SHIP complex
100401228
MiDAC complex
100401228
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
100401228
Heterochromatin formation proteins
Other heterochromatin formation proteins
100401228
Chromatin remodeling factors
NuRD complex
100401228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
DUF5491
Peptidase_C101
Motif
Other DBs
NCBI-GeneID:
100401228
NCBI-ProteinID:
XP_054110547
LinkDB
All DBs
Position
4:complement(161146430..161149666)
Genome browser
AA seq
482 aa
AA seq
DB search
MAQMQGTWRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYQKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCXLSIGGSVAS
AVKLNKQQMDIAVNWAGGLHHAKKFEASGFCYVNDTVLAILELLKYHQRVLYIDIDIHHG
NGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAINCPLQDGIDNESYEAI
FKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTITGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVAQCWTYETAVALDTEMPNELPYNDYFEYFGPDFKLHISPSNMTDQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKHISICSSDKRIACQEEF
SDXEEEGEGGRKNASNFKKAKRVKTEDEQEKEPEEKKEVTEKEKTKEEKPEAKGVKEEVK
LA
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagatgcagggcacctggcggaaagtctgttactactacgacggggatgttgga
aattactattatggacaaggccacccaatgaagcctcaccgaatccgcatgactcataat
ttgctgctcaactatggtctctaccaaaaaatggaaatctatcgccctcacaaagccaat
gctgaggagatgaccaagtaccacagcgatgactacattaaattcttgcgctccatccgt
ccagataacatgtccgagtacagcaagcagatgcagagattcaacgttggtgaggactgt
ccagtattcgatggcctgtttgagttctgttagttgtctattggtggttctgtggcaagt
gctgtgaaacttaataagcagcagatggacatcgctgtgaattgggctgggggcctgcac
catgcaaagaagttcgaggcatctggcttctgttacgtcaatgatactgtcttggccatc
ctggaactgctaaagtatcaccagagggtgctgtatattgacattgatattcaccatggc
aacggtgtggaagaggccttctataccacagaccgggtcatgactgtgtcctttcataag
tatggagagtacttcccaggaactggggacctacgggatatcggggctggcaaaggcaag
tattatgctattaactgcccgctccaagatgggattgataacgagtcctatgaggccatt
ttcaagccagtcatgtccaaagtaatggagatgttccagcctagtgccgtggtcttacag
tgtggctcagactccctatctggggatcggttaggttgcttcaatctgaccatcacaggg
cacgccaagtgtgtggaatttgtcaagagctttaacctgcccatgctgatgctgggagga
ggtggttacaccattcgtaatgttgcccaatgctggacgtatgagacagctgtggccctg
gatacggagatgcctaatgagcttccatacaacgactacttcgaatactttggaccagat
ttcaagctccacatcagtccttccaatatgactgaccagaacacgaatgagtacttggag
aagatcaaacagcgactgtttgagaacctgaggatgctgccacatgcacccggggtccaa
atgcaggcgattcctgaggacgccatccctgaggagagtggcgatgaagacgaagaagac
cctgacaagcacatctcgatctgctcctctgacaaacgaattgcctgtcaggaagagttc
tcagacnntgaagaggagggagaggggggccgcaagaacgcttccaacttcaaaaaagcc
aagagagtcaaaacagaggatgaacaagagaaagagccagaggagaagaaagaagtcaca
gaaaaggagaaaaccaaggaggagaagccagaagccaaaggggtcaaagaggaggtcaag
ttggcctaa
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integrated database retrieval system