Callithrix jacchus (white-tufted-ear marmoset): 100401363
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Entry
100401363 CDS
T03264
Symbol
SHANK1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1 isoform X1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
100401363 (SHANK1)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
SH3_2
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
100401363
NCBI-ProteinID:
XP_035142618
LinkDB
All DBs
Position
22:complement(42885473..42945224)
Genome browser
AA seq
2169 aa
AA seq
DB search
MTHSPATSEDEERHSASECPEGGSESDSSPDGPGQGPRGTRGRGSGAPGSLASVRGLQGR
SMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLF
QPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGL
KKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHI
DFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELL
LYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKE
TCARILLYRGADKDVKNNNGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR
RGPPGTGLTVPPALLRANSDTSMALPDWMVFSAPGASSSGAPGPTSGSQGQSQPSAPTTK
LSSGTLRSASSPRGARARSPSRGRHPEDAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGS
LGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSIGEGGFWEGQVKGRV
GWFPSDCLEEVANRSQESKQESRSDKAKRLFRHYTVGSYDSFDAPSLIDGIGPGSDYIIK
EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD
FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKAPQQAKRLPPP
TISLRSKSMTSELEEMVSPWKKKSEYEQQPAPVPSMEKKRTVYQMALNKLDEILAAAQQT
ISASESPGPGGLASLGKHRPKGFFATESSFDPHHRSQPSYERPSFLPPGPGLMLRQKSIG
AAEDDRPYLAPPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGG
PFNPGSSGVLPASSPASFDGPSPPDTRVGSREKSLYHGGPLPPAHHHPPHHHHHHAPPPQ
PHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGAPSPSHHGSAGG
GGGSSQGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAPSP
TSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPAGGGG
GSSPSPAPAMSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRS
TLFLSTDAGDEDGGDGGLGAGGTPGPRLRHSKSIDEGMFSAEPYLRLESAGAGSGAGYGG
YGAGSRAYGGGGGSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESSEGGG
APQPPPRPPSPRYEVPPPTPHHHSPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKS
LPASPPAARRSLLHRLPPTAPGVGPLLLQLGTEPPAPHPGVSKAWRSGAPEEPERLPLHV
RFLENCQPRAPVASGRGPPSEDGPGVQPPSPRRSVPPSPTSPRASEENGLPLLVLPPPAP
SVDVEDGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPHPLPDPPAPATPLPPVPPPAVAA
APPTLDSTASSLTSYDSEVATLTQGAPAAPGDPPPPGPPAPAAPAPAAPQPGPDPPPGTD
SGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGGGAGVASGPELLDTYVAYL
DGQAFGGSGPPGPPYPPQLMTPSKLRGRALGAAGGLRPGPSGGLRDPVTPTSPTVSVTGA
GTDGLLALRACSGPSAAGVAGGPVAVEPEVPPVPLPTASSLPRKLLPWEEGPGPPPPPLP
GPLAQPQASALATVKASIISELSSKLQQFGGSSAAGGALPWARGGSGGSTDSHHGGASYV
PERTSSLQRQRLSDDSQSSLLSKPVSSLFQNWPKPPLPPLPTGTGVSPTAAAAPGATSPS
ASSSSTSTRHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYPGL
FDIRGSPTGGAGGSADPFAPVFVPPHPGMSGGLGGALSGASRSLSPTRLLSLPPDKPFGA
KPLGFWTKFDVADWLEWLGLAEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNID
RALKFFLER
NT seq
6510 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgcgacaagcgaggacgaggaacgccacagtgccagcgagtgtccc
gaggggggctcagagtccgacagctccccagacgggccaggtcaaggcccccgggggacc
cggggccggggcagtggggcacctggtagcctggcctctgtcagaggccttcagggccgc
tcaatgtcagtcccagacgacgcccacttcagcatgatggtcttcaggattggcatccca
gacctgcaccagacaaaatgcctgcgcttcaaccctgatgccaccatctggacggccaag
cagcaggtgctctgtgccctgagcgagagcctgcaggatgtgctcaactatggcctgttc
cagccggccacctccggccgtgacgccaacttcctggaggaggagaggctgcttcgggag
tacccccagtcttttgagaagggggtcccctacctggagttccgatacaagacccgagtt
tacaaacagaccaacctggatgagaagcagctggccaaattgcacacgaagacggggttg
aagaagttcctggagtatgtgcagctcgggacatctgacaaggtggcgcggctgctggac
aaggggctggaccccaattaccatgactcagattcgggagagacccctttgacactggcg
gcccagaccgaaggctccgtagaggtgattcgaaccctgtgcctgggtggagcccacatt
gacttccgggcccgggatggcatgacagcgctgcataaggccgcctgtgcccgacactgc
ctggcactcacggcgctcctggaccttgggggttcccccaactataaggaccgccggggt
ctgacccccttgttccacacggctatggtgggtggtgacccccgatgctgtgagctgctg
ctgtacaacagggcccagctgggcatagctgatgagaacggctggcaggagattcaccag
gcctgccagcggggtcattctcagcacctggagcacctgctcttctacggggctgagcct
ggagcccagaacgcctcggggaacacggctctgcacatctgcgccctctacaataaggag
acctgtgccaggatcctcctgtatcgaggggccgacaaggatgtgaagaataacaacgga
cagacccccttccaggtggccgtgattgctgggaattttgagctgggggagctgatccga
aaccatcgagaacaggatgtggtgcccttccaggagtccccgaagtacgcggcccgtcga
cggggacccccgggcacagggctgacggtgcccccggcgctgctgagagccaacagtgac
accagcatggccctgcccgactggatggtattctctgccccgggggcctcatcctctggg
gcccctggccctacctcagggtcccagggccagtcacagccctcagccccgaccaccaag
ctcagcagcgggaccctccgaagtgccagcagcccccggggtgcccgtgcccgctctcca
tccagagggaggcaccctgaggacgccaagaggcagccccgaggccggcccagctccagt
gggacaccccgggaagggccagctgggggcacagggggctcagggggccctgggggctcc
ctgggcagccgcgggaggcggaggaagctctactcagcggtacccggacgatccttcatg
gctgtgaaatcgtaccaggcccaagccgagggggagatttccctgagcaagggcgagaag
atcaaagtacttagcatcggggaaggaggcttctgggaaggccaggtcaaaggtcgtgtt
ggctggttcccctctgactgcctggaagaggtggccaatcgctctcaggagagcaagcaa
gaaagccgcagtgacaaggcaaagagactcttccggcattataccgtgggctcctacgac
agctttgatgccccaagcttaatcgatgggattggcccagggagcgattacatcattaag
gagaagacagtcttgctgcagaagaaggacagtgagggatttgggttcgtgctccggggg
gccaaggcgcagacccccatcgaggagttcacccccaccccggccttcccggcgctgcag
tacctggagtcagtggacgagggtggcgtggcatggcgagctggactgcgaatgggagac
ttcctcatcgaggtgaatgggcagaacgtggtgaaagtcggccaccggcaggtggtgaac
atgatccgccagggggggaacacgctgatggtgaaggtggtgatggtcaccaggcacccg
gacatggatgaggcagtgcacaagaaagcaccccagcaggccaagcggctgccgccccca
accatctctctgcgttccaaatctatgacctcagagttggaggagatggtctccccctgg
aagaagaagagtgagtacgagcagcagccggcgccggtgcccagcatggagaaaaagcgg
accgtgtatcagatggctctcaacaaactggacgaaatcctggctgcagctcaacagacc
atcagtgcaagcgagagccctgggcccggtggcctcgcctccctgggcaaacaccgaccc
aaaggcttttttgccactgagtcaagcttcgatccccaccaccgttcccagccaagttat
gagcgtccttctttcctgcctccaggacctgggctgatgctccgacaaaaatctatcggg
gcagcagaagatgacagaccttacctagcacccccagccatgaaattcagccgcagcctg
tctgtgcctggttcggaggacattcccccgccacccaccacgtccccaccggagcccccc
tatagcacacctccagccccctcctcctcaggccgcctcaccccctccccccggggaggg
cccttcaaccctggctccagtggcgtcctccccgcctcctccccagcatcctttgacggg
ccctcccctcccgacacccgcgtgggaagccgcgagaaaagcctgtaccatggcgggccc
ctgccccccgcccaccaccacccgccccaccaccaccaccaccacgccccgccgccgcag
ccccaccaccaccacgcccacccccctcatcctcccgagatggagacaggcggctctccc
gacgaccctccaccccgcctggcgctggggccccagcccagcctgcgaggctggaggggc
ggcgggcccagcccaactcccggggccccgtccccgtcgcaccacggcagcgccggcggg
ggcggcggctcctcgcagggcccggctctgcgctacttccagctgcccccgcgggcggcc
agcgccgccatgtacgtgcccgcccgctcgggccgcggccgcaagggcccgctggttaag
cagaccaaggtggaaggcgagccccagaagggcggcggcctcccgcccgcgccgtcgccc
acgtcccctgcctccccgcagccgccgcccgcggtggccgcgccctcggagaagaactcc
atccccatccccaccatcatcatcaaggccccgtccaccagtagcagcggccgcagcagc
cagggcagcagcaccgaggcagagccccccacccagcccgagcccgcgggaggcggcggc
ggctcctcgcccagccccgccccggccatgtcgcccgtgcctccgtccccctcgcccgtg
cccacccccgcctcgcccagcggcccggccacgctggacttcaccagccagttcggagcc
gccctggtgggggcggcccggagggaggggggctggcagaacgaggcgcgccggcgctcc
acgctgttcctctccaccgacgcgggggacgaggacggcggcgacggcgggctgggtgca
gggggcaccccgggcccacggctgcgccactccaaatccatcgacgagggcatgttctcc
gccgagccctacctccggctggagtctgcgggcgccggcagcggtgcgggctacggtggc
tacggggctggaagccgagcctacgggggtggcgggggcagcagcgccttcaccagcttc
ctgcccccgcgacccctggtgcacccgctgaccggcaaggccctggatcccgcctccccg
ctggggctggccctggcagcccgtgagcgagcgctgaaggagtcctcggagggcggcggg
gccccccagccccctcccaggcccccgtcgccccgatacgaggtcccgccgcccaccccg
caccaccactcgcctcacgcccaccatgagccagtgctgcgtctctggggggcctccccg
ccggaccccgctcgcagggagctggggtacagggccgggctgggcagccaggagaagtcc
cttcccgccagcccgcccgctgcccggcgctccctgctacatcgcctgccgcccaccgcc
ccgggggtggggcccctcctgctgcagctgggaacggagcccccggccccgcatcccgga
gtgagcaaggcctggaggtccggagcccccgaagagcccgagcggctgccgctgcacgtg
cggttccttgaaaactgccagccccgggcccccgtggcgagcggaagggggcccccctcg
gaggacgggccaggggtccagccacccagcccacgccggtccgtgcccccctccccgacc
tccccgagggccagtgaagagaacgggctgcccctgctggtcctgccgcctcccgccccc
tcggtggatgtggaagacggcgaattcctcttcgtggaaccgctgcctccgcccctggaa
ttctccaacagcttcgaaaagccggagtcgcccctcacgcctgggcctccgcacccgcta
cccgacccacctgctccggccaccccgttacctcccgtgccgcccccggctgtcgccgca
gcccctcccaccctggactccaccgcatccagcctgacatcctatgacagcgaggtggcc
accctgacccagggggcccccgccgctcctggggacccccctccaccaggcccacctgcc
ccagcagcaccggctcccgctgccccacagcccggcccagatcctccgcctggcacggat
tctggcatcgaggaagtggacagtcggagcagcagtgaccatccgctggagaccatcagc
agtgcctccacgctgagcagcctgtctgccgaaggtggtggcagcgcagggggtgggggc
gggggtggggccggtgtggccagtgggccagagcttttggacacctatgtggcctacctg
gatggccaggccttcgggggcagcggtcctcccggcccgccataccctcctcagctcatg
actccctctaagctccgcggccgggcgctaggagctgctggaggcctgcggcctggcccc
agtgggggactccgagaccctgtcactcccactagccccaccgtctcggtgacaggagct
ggaaccgatgggctcctggccctgcgcgcttgttcaggaccctccgcggccggcgtggcg
gggggtccggtggctgtagagccagaagtcccaccggtgcccttgcccacggcctcctct
ctgcctcggaagctgctgccctgggaggagggcccgggcccaccgccaccacctctgccc
gggcccctggcccagcctcaggcctcagctttggccacagttaaagccagcatcatcagt
gaactcagctccaagcttcagcagtttgggggctcctcggcagccggaggcgctctgccc
tgggcccgaggaggcagcgggggaagcacagacagtcaccacgggggagccagctacgtc
cctgagaggacttcctccctgcagcggcagagactctccgacgactcgcagtcctcactc
ctctccaagccagtcagcagcctgtttcagaactggcctaaaccacctctgccgccgctc
cccactggaacaggggtctccccgacagccgctgcggccccaggggccacctcaccctca
gcctcctcctcctccacgtccacccgccacctccagggcgtggagttcgagatgcggccc
cctctgctccgccgggcccccagcccctcgctgctgcccgcctcggagcacaaggtcagc
ccggcgcccaggccctcttccctgcccatcctgccttctggacccctctacccaggccta
tttgacatccgtggctccccaactggaggggcaggaggctcagctgatcccttcgcccca
gtatttgtgccaccacacccgggcatgtccggggggctcgggggagccttgtcaggggcc
tcgcgctccctctcaccaacccgcctgctctcgctgcccccggacaagccgtttggcgct
aaacctctggggttctggaccaagtttgacgtggccgattggctggagtggctgggcttg
gcggagcaccgagcccagttcctggaccatgagatcgatggctcccacctgcccgccttg
accaaggaggactacgtcgatctcggtgtgaccagggtggggcaccgcatgaacatcgac
cgggctctcaaattcttcctggagaggtga
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