Callithrix jacchus (white-tufted-ear marmoset): 100405358
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Entry
100405358 CDS
T03264
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X4
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100405358 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cjc03400
]
100405358 (LIG3)
Enzymes [BR:
cjc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100405358 (LIG3)
DNA repair and recombination proteins [BR:
cjc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
100405358 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
zf-PARP
DNA_ligase_A_C
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
100405358
NCBI-ProteinID:
XP_002748408
Ensembl:
ENSCJAG00000014668
LinkDB
All DBs
Position
5:complement(95209577..95238961)
Genome browser
AA seq
954 aa
AA seq
DB search
MSLAFKILFPQTIRALSQKEPCLFRGHHWPDVRQFSQWSETDLLHGQRLFLRRKPILSFQ
ESHLRSRATYLVCLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGICRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH
IADLSSKAASTPKKKAVVQAKLTTTGQVTSPVKGTSFVTSTNPRKFSGFSAKPNTSGEAP
SSPTRKTSLSSSKCDPRHKDCLLREFRKLCAMVADNSSYNTKTQIIQDFLRKGSAGDGFH
GDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDEMARDLEQGDVSETIRVFFEQ
SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKKPGQRRALSVQASLMTP
VQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVVH
FKDYIPQAFPGGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NDVSLMDRPLCERRKFLHENMVEIPNRIMFSEMKRVTKASDLADMITRVIREGLEGLVLK
DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS
QKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAA
VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV
MAGDEGSSTTGGSSEENKGPSGSSVSHKAPIASPSKPYTSTKKAEGKLSNSNSKSGNMLT
AKPSPVTMGEKLAMKSSPVKVGEKRKAADETLCQTKRRPASEQRGRRTVPAGRR
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggctttcaagatcctctttccacaaaccatccgtgcactcagccaaaaagaa
ccgtgcctattccgaggacatcactggcctgatgtaagacaattcagccagtggtcagaa
acagatctgcttcatggccagcgcctcttcctgagaagaaagcctattctgtcattccag
gaaagccatctaagatcacgtgccacctaccttgtttgcttgccagggttgcatgtggga
ctctgcagtggcccctgtgagatggctgagcaacggttctgtgtggactatgccaagcgt
ggcacagctggctgcaaaaaatgcaaggaaaagattgtgaagggcatatgccgaattggc
aaagtggtaccaaatcccttctcagagtctgggggtgatatgaaagagtggtaccacatt
aaatgcatgtttgagaaactagagcgggcccgggccaccacaaaaaaaatcgaggacctc
acagagctggaaggctgggaggaactggaagataatgagaaggaacagataacccagcac
attgcagatctgtcctctaaggcagcaagtacaccaaagaagaaagctgttgtccaggct
aagttgacaaccactggccaggtgacatctccagtgaaaggcacctcatttgttaccagt
actaatccccggaaattttctggcttttcagccaaacccaacacctctggggaagccccc
tcaagccccacccgtaagacaagtctgtcttcaagcaaatgtgaccccaggcataaggac
tgtctgctacgggagtttcgaaagttgtgcgccatggtggctgataattctagctacaac
accaagacccagatcatccaggacttccttcggaaaggctcagcaggagatggtttccac
ggtgatgtgtacctaacagtgaagctgctgctgccaggagtcattaagagtgtttacaac
ttgaatgataagcagattgtgaagcttttcagtcgcatctttaactgcaacccagatgag
atggcacgggacctagagcagggtgacgtgtcagagacaatcagagtcttctttgagcag
agcaagtcttttcccccagctgccaagagcctccttaccatccaggaagtggatgagttc
cttctgcggctgtccaagctcaccaaggaggatgagcagcaacaggccctgcaggacatt
gcctccaggtgtacagccaatgaccttaaatgcatcatcaggttgatcaaacatgatctg
aagatgaactcaggtgcaaaacatgtgttagacgcccttgaccccaatgcctatgaagcc
ttcaaagcctcgcgcaacctgcaggatgtggtggagcgggtccttcgcaatgagcaggag
gtggagaagaagccaggccagagacgagctctgagcgtccaggcctcactgatgacacct
gtgcagcccatgctggcggaggcctgcaagtccattgagtatgcaatgaagaagtgtccc
aatggcatgttctctgagatcaagtacgatggagagcgagtccaagtgcataagaatggg
gaccacttcagctacttcagccgcagtctcaagcccgtcttgcctcacaaggtggtccac
tttaaggactacatcccccaagcttttcctgggggccaaagcatgatcttggactcggag
gtgcttctgattgacaacaagacagggaagccactgccctttgggactctgggagtgcac
aagaaagcggcctttcaggatgccaatgtctgcctgtttgtttttgattgtatctacttt
aatgatgtcagcttgatggacaggcctctgtgtgagcggcggaagtttcttcatgagaac
atggttgaaattccaaaccggatcatgttctcagaaatgaaacgagtcacaaaagcttcg
gacttggctgacatgataacccgggtgatccgggagggattggaggggctggtgctgaag
gatgtgaagggtacatatgagcctgggaagcggcactggctgaaagtgaagaaagactat
ttgaatgagggggccatggccgacacagctgacctggtggtccttggggccttctatggg
caagggagcaaaggcggcatgatgtcaatcttcctcatgggctgctatgaccctggcagc
cagaagtggtgcacagtcaccaagtgtgcaggaggccatgacgatgccacacttgcccgc
cttcagaaggaactagacatggtgaagatcagcaaggaccccagcaaaatacccagctgg
ctgaaggtcaacaagatctactatcctgacttcatcgtcccagacccaaagaaagctgct
gtgtgggagatcacaggggctgaattctccaaatcggaggctcacacagctgatgggatc
tccatccgattccctcgctgcacccgaatccgagatgataaggactggaaatctgccact
aaccttcctcaactcaaggaactgtaccagctgtccaaggagaaagcagacttcactgta
atggctggagatgaaggaagctctactacagggggtagcagtgaagagaataaaggtccc
tcggggtcttctgtgtcccacaaggctcccatcgcctcccccagcaagccatacaccagt
accaagaaagcagaagggaagctgagtaactccaacagcaaaagcggcaacatgctgact
gcaaagccttcccctgtgacaatgggagagaagctggccatgaagtcttctccggtgaaa
gtgggggagaagcggaaagctgctgatgagaccctgtgccaaacaaagaggcggccagcc
agcgagcagagaggaaggagaactgtgccagcaggcaggagatag
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