Callithrix jacchus (white-tufted-ear marmoset): 100414004
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Entry
100414004 CDS
T03264
Symbol
RXRB
Name
(RefSeq) retinoic acid receptor RXR-beta isoform X2
KO
K08525
retinoid X receptor beta
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03320
PPAR signaling pathway
cjc04659
Th17 cell differentiation
cjc04919
Thyroid hormone signaling pathway
cjc04920
Adipocytokine signaling pathway
cjc04928
Parathyroid hormone synthesis, secretion and action
cjc05200
Pathways in cancer
cjc05202
Transcriptional misregulation in cancer
cjc05207
Chemical carcinogenesis - receptor activation
cjc05216
Thyroid cancer
cjc05222
Small cell lung cancer
cjc05223
Non-small cell lung cancer
cjc05226
Gastric cancer
cjc05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
100414004 (RXRB)
09152 Endocrine system
04920 Adipocytokine signaling pathway
100414004 (RXRB)
03320 PPAR signaling pathway
100414004 (RXRB)
04919 Thyroid hormone signaling pathway
100414004 (RXRB)
04928 Parathyroid hormone synthesis, secretion and action
100414004 (RXRB)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100414004 (RXRB)
05202 Transcriptional misregulation in cancer
100414004 (RXRB)
05207 Chemical carcinogenesis - receptor activation
100414004 (RXRB)
09162 Cancer: specific types
05226 Gastric cancer
100414004 (RXRB)
05216 Thyroid cancer
100414004 (RXRB)
05222 Small cell lung cancer
100414004 (RXRB)
05223 Non-small cell lung cancer
100414004 (RXRB)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
100414004 (RXRB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
100414004 (RXRB)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cjc03310
]
100414004 (RXRB)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
100414004 (RXRB)
Nuclear receptors [BR:
cjc03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
100414004 (RXRB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
100414004
NCBI-ProteinID:
XP_002746468
Ensembl:
ENSCJAG00000021619
LinkDB
All DBs
Position
4:complement(37526199..37533300)
Genome browser
AA seq
532 aa
AA seq
DB search
MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAAGGEQQTP
EPEPGEAGRDGMGDSGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPP
PPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKP
PVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSC
RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPV
DRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFS
SLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVL
TELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPE
QQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggccgctcgcccgcccttcctccctcagcggcatgccgcagggcagtgtggg
ccggtgggggtgcgaaaagaaatgcattgtggggtcgcgtcccggtggcggcggcgacgg
ccctggctggatcccgcagcggcggcggcggcggcggcaggcggagaacaacaaaccccg
gaaccggagccgggggaggccggacgggacgggatgggcgacagcgggcgggactcccga
agcccagacagctcctccccaaatccccttccccagggagtccctcccccttctcctcct
gggccacccctacccccttcaacagctccatcccttggaggctctggggccccaccccca
cccccgatgccaccacccccactgggctctccctttccagttatcagttcttccatgggg
tcccctggtctgccccctccagctcccccaggattctccgggcctgtcagcagcccccag
attaactcaacagtgtcgctccctgggggtgggtctggcccccctgaagatgtgaagcca
ccagtcttaggggtccggggcctgcactgtccaccccctccaggtggcccgggggctggc
aaacggctatgtgcaatctgcggggacagaagctcaggcaaacactacggggtttacagc
tgtgagggttgcaagggcttcttcaaacgcaccatccgaaaggaccttacgtactcttgc
cgggacaacaaagactgcacagtagacaagcgccagcggaaccgctgtcagtactgccgc
taccagaagtgcctggccactggcatgaagagggaggcggtacaggaggagcgtcagcgg
ggaaaggacaaggatggggatggggagggggctgggggagcccctgaggagatgcctgtg
gacaggatcctggaggcagagcttgctgtggagcagaagagtgaccagggcgttgagggt
cctgggggaaccggtggtagcggcagcagcccaaatgaccccgtgactaacatctgtcag
gcagctgacaaacagctattcacgcttgttgagtgggcgaagaggatcccacacttttcc
tccttgcctctggatgatcaggtcatattgctgcgggcaggctggaacgaactcctcatt
gcttccttctcccaccgatccattgatgttcgagatggcatcctccttgccacaggtctt
catgtgcaccgaaactcagcccattcagcaggagtaggagccatctttgatcgggtgctg
acagagctagtgtccaaaatgcgtgacatgaggatggacaagacagagcttggctgcctg
agggcaatcattctgtttaatccagatgccaagggcctctccaaccctagtgaggtggag
gtcctgcgggagaaagtgtatgcatcactggagacctactgcaaacagaagtaccctgag
cagcagggacggtttgccaagctgctgctacgtcttcctgccctccggtccatcggcctt
aagtgtctagagcatctgtttttcttcaagctcattggtgacacccccatcgacactttt
cttatggagatgcttgaggctccccatcaactggcctga
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