Callithrix jacchus (white-tufted-ear marmoset): 100414472
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Entry
100414472 CDS
T03264
Symbol
TRPA1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
100414472 (TRPA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cjc04040
]
100414472 (TRPA1)
Ion channels [BR:
cjc04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100414472 (TRPA1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
100414472
NCBI-ProteinID:
XP_002759054
Ensembl:
ENSCJAG00000007735
LinkDB
All DBs
Position
16:complement(25976923..26045288)
Genome browser
AA seq
1140 aa
AA seq
DB search
MSISMRKGASARGEKLHQVASMKRSLKKMWRPGEKKEPQAVLYEDVPNDTDDCKESLKVV
FEGSTCGLQNFKNQKILNRCNNVDISLHYAAAKGQVELMEKITRDSSFEVLNAMDDYGNT
PLHCAVEENQIESVKFLLSRGANPNLRNFNMIAPLHIAVQGTHNEVMKVLLEHRSIDINL
EGENGNTSVIIACTKNNSEALQILLNKGAKPCKSNKWGCFPIHQAAFSGSKECMEILLRF
GEEHGYNRQLQINFVNNGKASPLHLAVQNGDLEMIKMCLDNGAQIDLVEKGRCTALHFAA
TQGATEIVKLMISSYSGGMDIVNTTNGSGETMLHRASLFDHHELADYLISVGADINRIDS
EGRSPLILATASASWNVVNLLLSKGAQVNIKDNFGRNFLHLTVQHPYGLKNLRPEFMQMQ
HIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSINSKSKDKKSPLHFAASYGRIN
TCQRLLQDITDTRLLNEGDLHGMTPLHLAAKNGHEKVVQLLLKKGALFLSDHNGWTALHH
ASVGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADIVLNKQQ
ASFLHVALHNKRKEVVLTTIRSKRWDECLKVFCHNSPGNKCPITEMIEYLPECMKVLLDF
CMLPSTEDKSCRDYYIEYNFKYLQCPLEFTRKTTPTQDITYEPLIALNAMVQNNRIELLN
HPVCKEYLLMKWMAYGFRAHMINLGSYCLGLIPMTFLVVNIKPGMAFNSTGIINETSDHS
EILDTTDSYLIKTCMILVFLSSIFGYCKEVVQIFQQKRNYFMDINNIIEWIIYTTGIIFV
LPLFIEIPAHVQWQCGAVAIYLYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFVF
LLLAFGLSFYVLLNLQDAYSSPLLSIIQTFSMMLGDINYRESFLEPYLRNELAYPVLSFA
QLIFFTLFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVD
QKSTIVYPNKPRSGGILFHIFFCLFCTGEIRQEIPNADTSLEMEILKQKYRLKDLTCLLE
KQHELIKLIIQKMEIISETEDEDNHCSFQDRFKKEQMEQRNSRWNTVLRAVKAKTHHLEH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatttccatgaggaaaggtgcctccgcgcgtggggagaagctgcaccaggtggcg
tcaatgaagcgcagcctgaagaagatgtggcgccctggagaaaagaaggagccccaggcc
gtgctctatgaggatgtgccgaacgacacggacgactgcaaggaatcgcttaaggtggtt
tttgaaggaagtacatgtggattacaaaactttaagaatcaaaagatattaaacagatgt
aacaatgtggacatctctttgcattatgctgcagcaaaaggccaagttgagctaatggag
aagatcaccagagattcctcttttgaagtgctgaatgcaatggatgattatggaaatacc
cctctgcactgtgctgtagaagaaaaccagattgaaagtgttaagtttcttctcagcaga
ggagcaaacccaaatctccgaaacttcaacatgatagcacccctccacatagctgtgcag
ggcacacacaacgaggtgatgaaggtcttgctggagcatagaagtattgacattaatttg
gaaggagaaaatggaaatacatctgtgataattgcatgcaccaaaaataatagtgaagca
ctgcagattttgcttaacaaaggagctaagccatgtaaatcaaataaatggggatgtttt
cctattcaccaggctgcattttcaggttccaaagaatgcatggaaatactattaaggttt
ggtgaagagcatgggtacaatagacagttgcagatcaactttgtgaataatgggaaagcc
agtcctctccacctggctgtgcaaaatggtgacttggaaatgatcaaaatgtgcctggac
aatggtgcacaaatagacctagtggagaaggggaggtgcacagcccttcattttgctgcc
acccagggagccactgagattgttaaattgatgatatcgtcctattctggtggcatggat
attgttaacacaaccaatggaagtggtgagaccatgcttcacagagcttcattatttgat
caccatgaactagcagactatttaatttcagtgggggcagatattaatagaatcgattct
gaaggacgctctccacttatattagcaactgcttctgcatcttggaatgttgtaaatttg
ctactctctaaaggtgcccaagtaaatataaaagataattttggacgtaattttctgcat
ttaactgtacaacacccttatggattaaaaaatctgcgacctgaatttatgcagatgcaa
cacatcaaagagctggtaatggatgaagacaacgatgggtgtacccctctacattatgca
tgtagacaggggggccctggttctgtaaataaccttcttggctttaatgtgtcaattaat
tccaaaagcaaagataaaaaatcacctctgcattttgcagccagttatgggcgtatcaat
acctgtcagaggctcctacaagacataactgatacaaggcttctgaatgaaggggacctt
catggaatgactcctctccatctggcagcaaagaatggacatgaaaaagtagttcagctt
cttctgaaaaaaggtgcattgtttctcagtgaccacaatggctggacggcattgcatcat
gcatctgtgggtgggtacactcagaccatgaaggtcattcttgatactaatttgaagtgc
acagatcgcctggatgaagatgggaacactgcacttcattttgctgcaagggaaggccac
gccaaagccgttgcccttcttctgagccacaatgctgacatagtcctgaacaagcagcag
gcctcctttttgcacgttgcacttcacaataagaggaaggaggtagttcttacgaccatc
aggagcaaaagatgggatgaatgtcttaaggttttttgtcataattctccaggcaataaa
tgtccaatcacggaaatgatagaatacctccctgaatgcatgaaggtacttttagatttc
tgcatgttgccttccacagaggacaagtcctgcagagactactatatcgagtataatttt
aaatatcttcaatgcccgttagaattcaccagaaaaacaacacctacacaggatattact
tatgaacctcttatagccctcaatgcaatggtacaaaataaccgcatagagcttctcaat
catcctgtgtgtaaagaatatttactcatgaaatggatggcttatggatttagagcccat
atgatcaatttaggatcttattgtcttggtctcatacctatgacctttctcgttgtcaat
ataaaaccaggaatggctttcaactcaactggaatcatcaatgaaactagtgatcattca
gaaatactagataccacggattcatatctaataaaaacttgtatgattttagttttttta
tcaagtatatttgggtattgcaaagaagtggtccaaattttccaacagaaaaggaattac
tttatggatataaacaatattattgaatggattatttacacgacgggcatcatttttgtg
ctgcccttattcattgaaataccagctcatgtgcagtggcaatgtggagcagttgctatt
tacctctattggatgaactttttattgtatcttcaaagatttgagaattgtggaattttc
attgttatgctggaggtaattttgaaaactttgttgaggtctacagttgtatttgtcttc
cttcttttggcttttggactcagcttttatgtcctcctgaatttacaggatgcctacagc
tctccattgctttcaataatccagaccttcagcatgatgctaggagatatcaattatcga
gagtccttcctagaaccatatctgagaaatgaattggcatatcccgttctgtcctttgca
caacttattttcttcacactatttgtcccaattgtcctcatgaatttacttattggtttg
gcagttggtgacattgctgaggttcagaaacatgcatcactgaagaggatagctatgcag
gtggagcttcacaccagcttagagaagaagctgccattatggtttctacgcaaagtggat
cagaaatccactatcgtatatcccaacaaacccagatctggtgggatattattccatata
ttcttttgtttattttgcactggagaaataagacaagaaataccaaatgctgacacatct
ttagaaatggaaatattaaagcagaaatatcggctgaaggatcttacttgtcttctggaa
aaacagcatgagctcattaaactgatcattcagaagatggagatcatctctgagacagag
gatgaagataaccattgttcttttcaagacaggtttaagaaagagcagatggaacaaagg
aatagcagatggaatactgtgttgagagcagtcaaggcaaaaacacaccaccttgagcat
taa
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