Coturnix japonica (Japanese quail): 107311605
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Entry
107311605 CDS
T04297
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
cjo
Coturnix japonica (Japanese quail)
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjo03021
]
107311605 (SCAF8)
03041 Spliceosome [BR:
cjo03041
]
107311605 (SCAF8)
Transcription machinery [BR:
cjo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107311605 (SCAF8)
Spliceosome [BR:
cjo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107311605 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
107311605
NCBI-ProteinID:
XP_015713736
LinkDB
All DBs
Position
3:45385992..45530158
Genome browser
AA seq
1365 aa
AA seq
DB search
MEAVKAFNSECGDVDILLYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQK
CKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRV
LNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNNTPGTPVTPVTPANVVQ
SLPDPWVSQIANTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSLLQALDAGLVVQ
LQALTAQLTAAAAAANTLNPLEQSVSFNKKLMDRFDFGEESEQNEEPKKETPTSQLPLVP
ESVNNSLFHQLAEQLQQQNLEHLRQQLLEQQQPQKASPEENQEGNFGSEHSASPSQGSSQ
QQFLEAETNVDDSMDIQQQDMDIDEAQDVAEEEIFEQEEKKSAVRSRSRTRSRSRSRSPR
KRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTL
SVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKL
SSGSYKIGSKIIKIAWALNKGVKTEYKQFWDVDLGVSYIPWEKVKLDDLEGFAEGGMIDQ
ETVNTEWETARSSEPAKENIQTTQSTAVDKSTVITTQTEAYTQPVTMLQIPVAPAVPAVS
LVPPAFPVTMSVPPPGYSAIPPPPFLRASFNPSQPPPGFMPPPVPPVVPPPVVPPPVVPP
VVPTSLVQPPLPIPQETMKDVPFSGLVLPVVGTVSSNLATPTLSSGSIFNPLPISKQESD
EKGSHLTDLQISSSENGRAVQSDVSSSSGLVGGVQPPSVSSSSGLTGEGQPPSVSSSSGL
AGGVQPPSVSSSSGLGGGVQPPTVSSSSGLAAGVQLPNVSSSSSLAGGVQPTSVSSSSGL
MAGVQPPNVSSSSGLLAGVHPPNISSSPGLLPGMQPPSVSSSSGVLAGVQPPSVSNNSGL
LLMPPPNVSSSSGLMGVPPPNISSNSGLLAMQHPAGIQNMPHLNISSQRMPGMPLIDIRP
GLMPHSPGPRFPLMQPGIPPQRSIPPPAILDPALHPPPRGPFPPADIFNQTERPFATPGR
QNIDSISNPEKRLPLGGDNIQQEGDRDYRFPPVENRDNLNRPSQVDVRDSVGRPPVDPRE
GIGRPPVDGREHFARPHVDMRENFGRPGIDNLGRREHFAFNSDKHWGQRGDYDEREHHAF
PIYGGPKSFHEDRERFRHVNYRFDSRSGPSWNRGFEQDAHRDFDDRRRPWERQRDRDDRD
FNFCREINGNRFGRDRMSNNWIPPPHPRVFEYFDGATSQRKADNLPQVNGENTETESQPP
TAQVQDDPELYEKLTSSVEINKEKSDTEADIESEPVVESTETEGT
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtaaaggcctttaacagcgagtgtggtgatgtagatattttgttgtactcg
ctgaatgattacaagcctcccatttctaaagctaaaatgacacagatcaccaaggcagca
atcaaggctatcaagttctacaagcatgttgtgcagagtgttgagaaattcattcaaaag
tgcaaaccagaatacaaggtgcctggtctgtatgtcattgactccattgtgagacagtcc
cggcatcagtttgggcaagagaaggatgtatttgctccaagattcagcaataacatcatc
agcacttttcagaacttgtatcgttgtcctggggatgacaagagtaaaattgttagagtg
ctaaacttatggcagaaaaataacgtgttcaagagtgaaatcattcagcctctcttggat
atggcagcaggaattcctccaccagttgtgacccccgtcttgcccagcactactgctgct
atgagcaacaacacaccaggaacacctgtgactccagttactccagccaacgtggtgcaa
agtttacctgatccttgggtatctcagattgctaatacagatacgcttgctgctgtagct
cagattttacagagtccccaaggccaacagcttcagcagttgatacagacgctgcagata
cagcagcagaaaccacagccttcactacttcaagccctggatgctggtcttgtcgttcaa
ttacaggccctaactgcacaacttactgctgcagctgctgctgccaatacacttaatccg
ttggaacagagtgtctcttttaataagaagctgatggacaggtttgactttggggaggaa
tctgaacaaaacgaagagcctaaaaaggaaactcccacttcccaactgcctttagtacca
gaatctgtgaacaactcactttttcaccaactagcagaacaactgcagcaacaaaattta
gaacatctcagacaacaacttctggagcaacagcagcctcaaaaggcaagccctgaggaa
aatcaagaagggaattttggttcagagcattctgcatcaccatcacaagggagcagtcaa
cagcagtttttagaagcagaaaccaatgtagatgattctatggatattcaacaacaggac
atggacatagatgaagcacaggatgttgctgaagaagagatttttgaacaagaagaaaag
aaatctgctgttcgttcaaggtcaagaactcgttcaagatcacgttcaaggtcaccaaga
aaacgaaggtctagatcacggtctggttctcgtaagcgtaaacatagaaagcgttcacgt
tcaagatcaagagaaaggaagagaaagtcatctcggtcctactccagtgaaagaagggct
agggaaagggaaaaagaacgtcagaaaaagggattgcctccaatacggtcaaaaacacta
agtgtttgcagcactactctttgggtaggccaagtagacaagaaggctacacagcaagat
ttgaccaacctgttcgaagaatttggacaaatagaatctattaatatgattcccccaaga
ggttgtgcatatgtctgcatggttcatagacaagatgcatatcgtgctcttcagaagctt
agttctgggtcctacaaaatcggatctaaaattattaagattgcctgggctttaaataaa
ggtgtgaaaacagagtataagcaattctgggatgtggatctgggagtttcatatattcct
tgggagaaggtaaaattggatgatttggagggctttgctgaaggtggcatgattgaccag
gagacggtaaatacagaatgggaaacagcgaggagctcagaacctgctaaagaaaatatt
caaactacgcagagcactgcagttgataagagcacagtgattacaacgcagacggaagct
tacacacaaccagtcactatgctacagattccagtagctccagctgtgcctgctgttagc
ttagttccacctgcatttcctgtcacaatgtctgtccctcctcctggttatagcgccatt
cctcctccacccttcttgcgagcaagtttcaatccttcacagccacctccaggttttatg
cctcccccagttcctcctgttgtccctcctcctgttgtcccaccacctgttgtcccacca
gttgttccaacgtctttagtacagcctccattgccaattcctcaagagacgatgaaggat
gtaccttttagtggcctggttctaccagttgttggtacagttagtagcaatctagccaca
ccaacgttatcttctggaagcatctttaatcctctgccaatcagcaaacaagaatctgat
gaaaagggatctcatcttacagaccttcagatttcttccagtgaaaacggtagagctgtg
caaagtgatgtctcgagtagctctggacttgttggaggagtgcagccacccagtgtctca
agcagttcggggcttactggagaaggccagccacccagtgtctcaagcagctctggactt
gcagggggagtgcagccacccagtgtttcaagcagctctggactcggaggaggagtgcaa
ccaccaactgtttcaagcagttctggtcttgcagcaggagtgcaactacccaatgtctcc
agtagctcttctcttgcaggaggagttcagccaaccagcgtctcgagcagctctggactt
atggctggagtgcaaccaccaaatgtctcaagtagctcagggcttctagctggagtgcat
ccacccaacatctcaagcagccctggccttcttccaggaatgcagcctcccagtgtttca
agtagctcaggagttctggcaggagtacagccaccaagtgtctcaaacaactctggtctt
cttctaatgccaccaccgaatgtttcaagtagttctggacttatgggagtgccaccacca
aatatttcaagtaattctggacttctggcaatgcagcacccagctggcattcaaaatatg
cctcatttaaatattagtagtcaaaggatgccaggaatgcctctcatagatatccgtcca
ggcttaatgccccactcacctggaccaaggtttccattaatgcagccaggaataccacca
cagcgtagtattcctcctccagcaatccttgatccagcacttcaccctccacctcgaggt
ccctttcctccagcagatatttttaatcaaacagaaagaccctttgcaacaccaggaaga
caaaatattgatagcatttctaatccggagaaaaggctgccacttggaggcgataatatt
cagcaggagggagacagagattatcgctttcctccagtggaaaaccgagataatctcaac
agaccatcccaagtggatgtcagagattctgttggacgaccaccagttgatccaagagag
ggcataggaagacctccagtagatggaagagaacattttgcaagacctcatgtagacatg
agagaaaattttggaagaccaggtatagataatcttggtcgaagagagcattttgctttc
aattcagataagcactggggacaaagaggagattatgatgaaagagagcaccatgccttt
cctatttatggtggccctaaaagcttccatgaggacagagagagatttcggcatgtaaac
tataggtttgatagtagaagtggtcccagctggaatagaggatttgaacaagatgctcac
agagattttgatgaccgcagaagaccctgggaaagacagagggacagggatgacagagat
tttaacttctgcagagaaattaatgggaacaggtttggaagagacagaatgtcaaacaac
tggatcccccctccacacccacgggtttttgaatattttgatggggccacttcccaacgc
aaagcggataatttgccccaggtaaatggtgaaaacacagagacagaaagtcaaccacca
actgcacaggtgcaggacgatccagaactttatgaaaaactgacatcttccgtcgagata
aacaaagagaagagtgacacagaagctgatatagaaagtgaaccagtggtagaaagcaca
gaaactgaggggacataa
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