Coturnix japonica (Japanese quail): 107322947
Help
Entry
107322947 CDS
T04297
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo03015
mRNA surveillance pathway
cjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107322947 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
107322947 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjo03019
]
107322947 (PABPC1L)
03041 Spliceosome [BR:
cjo03041
]
107322947 (PABPC1L)
Messenger RNA biogenesis [BR:
cjo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107322947 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
107322947 (PABPC1L)
Spliceosome [BR:
cjo03041
]
Complex C
Other components
Complex C specific factors
107322947 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
Nup35_RRM
RRM_occluded
DUF6262
Motif
Other DBs
NCBI-GeneID:
107322947
NCBI-ProteinID:
XP_015736999
UniProt:
A0A8C2UF09
LinkDB
All DBs
Position
20:complement(4591923..4600815)
Genome browser
AA seq
633 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSSGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKERE
AEFGARALEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSRGFGFVNFEK
HEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPFLGSFQPPPGYFLPPIPQPQTRAAF
YSPSPVVPVRPATRWSAQPSRPPSAYPAATPILRAAVQPRRLLTNISTTRQASTQVPRVP
PQAQRVANIGTQTINARVPSSPTMRGVPQYKYSLAVRNIQPMGSVPPGVQQVVEPAVHIQ
GQEPLTASVLAAAPPQEQKQMIGERLYPLIHAMHSSLAGKITGMLLEIDNSELLLLLESP
ESLHSKIEEAVAVLQAHQATEVSHKGSTAPFPQ
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagtggccccggctacccgttggcctctctctacgtgggggacctccaccct
gacgtgaccgaagccatgctctatgagaagttctcacctgctgggcccatcctgtccatc
cgggtgtgtcgggatgttgcctctcgccgatctctgggctatgcctacatcaacttccag
cagccggcagatgctgagcgagccctggacaccatgaacttcgaagtgatcaagggccga
cctgtccgaatcatgtggtcccagcgagaccctgggctcaggaagtcaggggttggaaat
gtctttatcaagaatctggatgactccattgataacaaagccctttacgatacattctcg
gcctttgggaacatcctgtcctgcaaggtggtttgtgatgaaaatggatccagtggccat
ggatttgtacattttgagacacaagaagctgcaactcgggccatccagaccatgaatggg
atgctcctcaatgaccgcaaagtctttgttggccactttaaatcccgcaaagagcgtgag
gcagagtttggggctcgggcactggagttcaccaacgtctacatcaaaaactttggggat
gatatggatgataacagactgcgggaaatattctccaggtttggaaagacactgagcgtc
aaagtcatgatggacaacactggccgctccaggggctttgggttcgtgaactttgagaaa
catgaagaagcccagaaggctgtggctgacatgaatggaaaggagatcaatgggcggatg
gtgtacgtgggccgggcgcagaagcggctggagcggcagagtgagctgaaacggaaattt
gagcagatgaagcaggagcgagtgagcaggtaccagggggtcaacctgtatgtgaagaac
ctggatgatgggatagatgacgagcggctgaggaaggaattctctccttatggcaccatc
accagtgccaaggtgatgacagagggtggccacagcaaagggtttggctttgtatgtttt
tcctctccagaagaggctaccaaggccgtgacagaaatgaatggacggattgttagcact
aagcctctctacgttgcactcgcacaaaggaaagaggagaggaaagcaattctcaccaac
cagtacatgcagcggttggccaccatgagggcactgcctggccctttccttggctccttt
cagcctcccccagggtatttcctcccccccatccctcagccgcaaaccagagctgctttc
tacagccccagcccagttgtccctgtccgtcctgccactcgctggagtgcgcagccctcc
cggcctccctcagcgtaccctgcagccacccccatcctgagggctgctgtgcagccccgg
cgcctgctgaccaacattagcaccacgagacaggcgtccacccaagtgcctcgtgtgccc
ccccaggcgcagagagtggccaacatagggacgcagacgatcaatgcccgggtgccctcc
tcgcccaccatgcggggtgtcccgcagtacaagtactccctggctgtgaggaacatccag
cccatgggcagcgtgccacctggagttcagcaggtggtagaacctgctgtgcatatccaa
gggcaggagccactgacagcatccgtgcttgcagcagcccctccacaggagcagaagcaa
atgataggtgaacggctctaccccctgatccatgcaatgcactcctcgttggctggcaag
atcacaggcatgctgctggagattgacaattcagagctgctgcttctgctggagtcccct
gaatccttgcactccaagattgaggaagcagttgccgttctccaggcacaccaggccact
gaggtgtcacacaagggcagcacagccccgttcccacagtga
DBGET
integrated database retrieval system